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Mouse SNP Summary
Symbol
Name
ID 		Tssr136340
transcription start site region 136340
MGI:6064107

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs45682453
MGI SNP Detail		 Chr15:98849552 Gm49450 within coordinates of
Tssr136340 1991 bp downstream
Tuba1a within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
rs49723623
MGI SNP Detail		 Chr15:98849674 Gm49450 within coordinates of
Tssr136340 1869 bp downstream
Tuba1a within coordinates of
 SNP C/G G G C G G
rs49798008
MGI SNP Detail		 Chr15:98849734 Gm49450 within coordinates of
Tssr136340 1809 bp downstream
Tuba1a within coordinates of
 SNP C/T T T T T T T C T T T T T T T T
rs580428250
MGI SNP Detail		 Chr15:98849773 Gm49450 within coordinates of
Tssr136340 1770 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219767413
MGI SNP Detail		 Chr15:98849797 Gm49450 within coordinates of
Tssr136340 1746 bp downstream
Tuba1a within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs243880198
MGI SNP Detail		 Chr15:98849798 Gm49450 within coordinates of
Tssr136340 1745 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264975970
MGI SNP Detail		 Chr15:98849863 Gm49450 within coordinates of
Tssr136340 1680 bp downstream
Tuba1a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs227253415
MGI SNP Detail		 Chr15:98849880 Gm49450 within coordinates of
Tssr136340 1663 bp downstream
Tuba1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245001784
MGI SNP Detail		 Chr15:98849995 Gm49450 within coordinates of
Tssr136340 1548 bp downstream
Tuba1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs48046886
MGI SNP Detail		 Chr15:98850066 Gm49450 within coordinates of
Tssr136340 1477 bp downstream
Tuba1a within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs51633134
MGI SNP Detail		 Chr15:98850081 Gm49450 within coordinates of
Tssr136340 1462 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
rs254476319
MGI SNP Detail		 Chr15:98850157 Gm49450 within coordinates of
Tssr136340 1386 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49016881
MGI SNP Detail		 Chr15:98850178 Gm49450 within coordinates of
Tssr136340 1365 bp downstream
Tuba1a within coordinates of
 SNP A/T A A A A A A A A A A T A A T A
rs46049162
MGI SNP Detail		 Chr15:98850292 Gm49450 within coordinates of
Tssr136340 1251 bp downstream
Tuba1a within coordinates of
 SNP C/T T T T T T T T T T T C T T C T
rs239156283
MGI SNP Detail		 Chr15:98850350 Gm49450 within coordinates of
Tssr136340 1193 bp downstream
Tuba1a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250896128
MGI SNP Detail		 Chr15:98850380 Gm49450 within coordinates of
Tssr136340 1163 bp downstream
Tuba1a within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs217413297
MGI SNP Detail		 Chr15:98850493 Gm49450 within coordinates of
Tssr136340 1050 bp downstream
Tuba1a within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs233983934
MGI SNP Detail		 Chr15:98850494 Gm49450 within coordinates of
Tssr136340 1049 bp downstream
Tuba1a within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586827736
MGI SNP Detail		 Chr15:98850530 Gm49450 within coordinates of
Tssr136340 1013 bp downstream
Tuba1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50089036
MGI SNP Detail		 Chr15:98850549 Gm49450 within coordinates of
Tssr136340 994 bp downstream
Tuba1a within coordinates of
 SNP G/T T T T T T T G T T T T T T T T
rs255389674
MGI SNP Detail		 Chr15:98850627 Gm49450 within coordinates of
Tssr136340 916 bp downstream
Tuba1a within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs45716074
MGI SNP Detail		 Chr15:98850676 Gm49450 within coordinates of
Tssr136340 867 bp downstream
Tuba1a within coordinates of
 SNP G/T G G G G G G G G G G T G G T G
rs583431089
MGI SNP Detail		 Chr15:98850752 Gm49450 within coordinates of
Tssr136340 791 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs223436814
MGI SNP Detail		 Chr15:98850796 Gm49450 within coordinates of
Tssr136340 747 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587192893
MGI SNP Detail		 Chr15:98850805 Gm49450 within coordinates of
Tssr136340 738 bp downstream
Tuba1a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235523139
MGI SNP Detail		 Chr15:98850909 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 634 bp downstream
Tuba1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261426678
MGI SNP Detail		 Chr15:98850960 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 583 bp downstream
Tuba1a within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs46601603
MGI SNP Detail		 Chr15:98850980 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 563 bp downstream
Tuba1a within coordinates of
 SNP A/C A A A A A A C A A A C A A C A
rs246771875
MGI SNP Detail		 Chr15:98850981 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 562 bp downstream
Tuba1a within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262243260
MGI SNP Detail		 Chr15:98851124 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Rr370012 within coordinates of
Tssr136340 419 bp downstream
Tuba1a within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221310714
MGI SNP Detail		 Chr15:98851197 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Rr370012 within coordinates of
Tssr136340 346 bp downstream
Tuba1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238854230
MGI SNP Detail		 Chr15:98851205 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Rr370012 within coordinates of
Tssr136340 338 bp downstream
Tuba1a within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259543550
MGI SNP Detail		 Chr15:98851260 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 283 bp downstream
Tuba1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48560295
MGI SNP Detail		 Chr15:98851275 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 268 bp downstream
Tuba1a within coordinates of
 SNP A/T T T T T T T T T T T A T T A T
rs49188835
MGI SNP Detail		 Chr15:98851329 Cpgi7685 within coordinates of
Gm49450 within coordinates of
Tssr136340 214 bp downstream
Tuba1a within coordinates of
 SNP C/T C C C C C C T C C C C C C C
rs250292784
MGI SNP Detail		 Chr15:98851563 Cpgi7685 within coordinates of
Rr404613 within coordinates of
Tssr136340 6 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264715687
MGI SNP Detail		 Chr15:98851721 Tssr136340 164 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231154360
MGI SNP Detail		 Chr15:98851777 Tssr136340 220 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T T T T T T T T T T T T T T
rs51401661
MGI SNP Detail		 Chr15:98851810 Tssr136340 253 bp upstream
 SNP A/T A A A A A A T A A A A A T A
rs216077453
MGI SNP Detail		 Chr15:98851840 Tssr136340 283 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T T T T T T T T T A T T T T
rs234199170
MGI SNP Detail		 Chr15:98851852 Tssr136340 295 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248841988
MGI SNP Detail		 Chr15:98851913 Tssr136340 356 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216771668
MGI SNP Detail		 Chr15:98851935 Tssr136340 378 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs49408065
MGI SNP Detail		 Chr15:98851997 Tssr136340 440 bp upstream
 SNP G/T G G G G G G T G G G T G G T G
rs256236950
MGI SNP Detail		 Chr15:98852126 Tssr136340 569 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs212242027
MGI SNP Detail		 Chr15:98852132 Tssr136340 575 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236867826
MGI SNP Detail		 Chr15:98852178 Tssr136340 621 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580698231
MGI SNP Detail		 Chr15:98852242 Tssr136340 685 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52418536
MGI SNP Detail		 Chr15:98852297 Tssr136340 740 bp upstream
 SNP G/T T T T T T T G T T T T T T T T
rs584443341
MGI SNP Detail		 Chr15:98852321 Tssr136340 764 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221228529
MGI SNP Detail		 Chr15:98852403 Tssr136340 846 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238995043
MGI SNP Detail		 Chr15:98852437 Tssr136340 880 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252932533
MGI SNP Detail		 Chr15:98852642 Gm56698 within coordinates of
Tssr136340 1085 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221761063
MGI SNP Detail		 Chr15:98852667 Gm56698 within coordinates of
Tssr136340 1110 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244685680
MGI SNP Detail		 Chr15:98852701 Gm56698 within coordinates of
Tssr136340 1144 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs48510545
MGI SNP Detail		 Chr15:98852778 Gm56698 within coordinates of
Tssr136340 1221 bp upstream
 SNP C/T C C C C C C C C C C T T C C T C
rs49616461
MGI SNP Detail		 Chr15:98852808 Gm56698 within coordinates of
Tssr136340 1251 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs231675094
MGI SNP Detail		 Chr15:98852865 Gm56698 within coordinates of
Tssr136340 1308 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51800177
MGI SNP Detail		 Chr15:98852882 Gm56698 within coordinates of
Tssr136340 1325 bp upstream
 SNP A/G A A A A A A G A A A A A A A A
rs260203106
MGI SNP Detail		 Chr15:98853057 Gm56698 within coordinates of
Tssr136340 1500 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46845474
MGI SNP Detail		 Chr15:98853071 Gm56698 within coordinates of
Tssr136340 1514 bp upstream
 SNP A/G G G G G G G A G G G A G G A
rs46914236
MGI SNP Detail		 Chr15:98853183 Gm56698 within coordinates of
Tssr136340 1626 bp upstream
 SNP A/T T T T T T T A T T T A T T A T
rs216868435
MGI SNP Detail		 Chr15:98853214 Gm56698 within coordinates of
Tssr136340 1657 bp upstream
 SNP A/T A A A A T T T A A T T T T T T T A A T A T T T T A A T T T T T T A T T T T A A A
rs228824963
MGI SNP Detail		 Chr15:98853229 Gm56698 within coordinates of
Tssr136340 1672 bp upstream
 SNP A/G G G G G A A A G G G G A A A A A A A G G G A G G G A A G A A G G A A G A A A A G G A A G A A G G G G G G
rs31663468
MGI SNP Detail		 Chr15:98853235 Gm56698 within coordinates of
Tssr136340 1678 bp upstream
 SNP G/T T G T G T
rs31599200
MGI SNP Detail		 Chr15:98853242 Gm56698 within coordinates of
Tssr136340 1685 bp upstream
 SNP C/T T C T C T
rs45632491
MGI SNP Detail		 Chr15:98853368 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1811 bp upstream
 SNP A/G G G G G G G G G G G A G G A G
rs249523514
MGI SNP Detail		 Chr15:98853387 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1830 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs32251147
MGI SNP Detail		 Chr15:98853447 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1890 bp upstream
 SNP A/G A A A G A A G A A A A G A G G A A A
rs232624403
MGI SNP Detail		 Chr15:98853455 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1898 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs253002629
MGI SNP Detail		 Chr15:98853514 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1957 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32491763
MGI SNP Detail		 Chr15:98853551 B430209F14Rik within coordinates of
Gm56698 within coordinates of
Tssr136340 1994 bp upstream
 SNP A/G A A A G A A G A A A A G G G G G A A
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory