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Mouse SNP Summary
Symbol
Name
ID 		Tssr136507
transcription start site region 136507
MGI:6064274

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217877960
MGI SNP Detail
Alliance Variant		 Chr15:100943411 Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
Tssr136507 1832 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs235152596
MGI SNP Detail
Alliance Variant		 Chr15:100943412 Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
Tssr136507 1831 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243240720
MGI SNP Detail		 Chr15:100943870 Cpgi7763 within coordinates of
Tssr136507 1373 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214349005
MGI SNP Detail		 Chr15:100943910 Cpgi7763 within coordinates of
Tssr136507 1333 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231716019
MGI SNP Detail		 Chr15:100943923 Cpgi7763 within coordinates of
Tssr136507 1320 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3657684
MGI SNP Detail		 Chr15:100943970 Cpgi7763 within coordinates of
Tssr136507 1273 bp downstream
 SNP C/T C T
rs220912692
MGI SNP Detail		 Chr15:100943976 Cpgi7763 within coordinates of
Tssr136507 1267 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242957125
MGI SNP Detail		 Chr15:100944001 Cpgi7763 within coordinates of
Tssr136507 1242 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs261013880
MGI SNP Detail		 Chr15:100944006 Cpgi7763 within coordinates of
Tssr136507 1237 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs226439613
MGI SNP Detail		 Chr15:100944077 Cpgi7763 within coordinates of
Tssr136507 1166 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242244773
MGI SNP Detail		 Chr15:100944093 Cpgi7763 within coordinates of
Tssr136507 1150 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253981913
MGI SNP Detail		 Chr15:100944099 Cpgi7763 within coordinates of
Tssr136507 1144 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220332819
MGI SNP Detail		 Chr15:100944109 Cpgi7763 within coordinates of
Tssr136507 1134 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A A A A A A A A A C A A A A
rs3658888
MGI SNP Detail		 Chr15:100944137 Cpgi7763 within coordinates of
Tssr136507 1106 bp downstream
 SNP A/G/T G A T T
rs258557303
MGI SNP Detail
Alliance Variant		 Chr15:100944233 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 1010 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs231897661
MGI SNP Detail
Alliance Variant		 Chr15:100944329 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 914 bp downstream
 SNP A/G G G G G G G G G G G A G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260498852
MGI SNP Detail
Alliance Variant		 Chr15:100944334 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 909 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263899171
MGI SNP Detail
Alliance Variant		 Chr15:100944354 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 889 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228992537
MGI SNP Detail
Alliance Variant		 Chr15:100944450 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 793 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243180034
MGI SNP Detail
Alliance Variant		 Chr15:100944578 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 665 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214098913
MGI SNP Detail
Alliance Variant		 Chr15:100944669 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 574 bp downstream
 SNP A/G/T A A G G A A A G G G G G G G G G A G A G G G G A G G A A G G G G G G A G G G G G A A G G T G G G G
rs31734761
MGI SNP Detail
Alliance Variant		 Chr15:100944688 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 555 bp downstream
 SNP C/T C T T C T
rs247219116
MGI SNP Detail
Alliance Variant		 Chr15:100944690 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 553 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216186016
MGI SNP Detail
Alliance Variant		 Chr15:100944691 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 552 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240168641
MGI SNP Detail
Alliance Variant		 Chr15:100944914 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 329 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263696996
MGI SNP Detail
Alliance Variant		 Chr15:100944929 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 314 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C C C C C C C C C T C C C
rs225915417
MGI SNP Detail
Alliance Variant		 Chr15:100944949 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 294 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs230888528
MGI SNP Detail
Alliance Variant		 Chr15:100944961 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 282 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs248193811
MGI SNP Detail
Alliance Variant		 Chr15:100944999 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 244 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220092158
MGI SNP Detail
Alliance Variant		 Chr15:100945052 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 191 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237699037
MGI SNP Detail
Alliance Variant		 Chr15:100945059 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 184 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252270160
MGI SNP Detail
Alliance Variant		 Chr15:100945107 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 136 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224697408
MGI SNP Detail
Alliance Variant		 Chr15:100945126 Cpgi7763 within coordinates of
Tmdd1 Coding-Synonymous
Tssr136507 117 bp downstream
 SNP C/T C C C C C C C C C C T C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248610148
MGI SNP Detail
Alliance Variant		 Chr15:100945200 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 43 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs266001969
MGI SNP Detail
Alliance Variant		 Chr15:100945245 Cpgi7763 within coordinates of
Tmdd1 Coding-NonSynonymous
Tssr136507 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226416023
MGI SNP Detail		 Chr15:100945399 Cpgi7763 within coordinates of
Rr509882 within coordinates of
Tssr136507 142 bp upstream
 SNP C/G C G
rs236972267
MGI SNP Detail		 Chr15:100945421 Cpgi7763 within coordinates of
Rr509882 within coordinates of
Tssr136507 164 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258163360
MGI SNP Detail		 Chr15:100945468 Cpgi7763 within coordinates of
Rr509882 within coordinates of
Tssr136507 211 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225421633
MGI SNP Detail		 Chr15:100945473 Cpgi7763 within coordinates of
Rr509882 within coordinates of
Tssr136507 216 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246994889
MGI SNP Detail		 Chr15:100945786 Tssr136507 529 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215675393
MGI SNP Detail		 Chr15:100945830 Tssr136507 573 bp upstream
 SNP A/G G G G G G G G G G G A A G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs32048265
MGI SNP Detail		 Chr15:100945841 Tssr136507 584 bp upstream
 SNP A/G A G G A G
rs32382416
MGI SNP Detail		 Chr15:100945848 Tssr136507 591 bp upstream
 SNP C/T T C C T C
rs213112988
MGI SNP Detail		 Chr15:100945873 Tssr136507 616 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G G G G G G G G G A G G G G
rs230834388
MGI SNP Detail		 Chr15:100945926 Tssr136507 669 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248324133
MGI SNP Detail		 Chr15:100945958 Tssr136507 701 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214611659
MGI SNP Detail		 Chr15:100945972 Tssr136507 715 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
rs31640863
MGI SNP Detail		 Chr15:100945976 Tssr136507 719 bp upstream
 SNP A/G A G G A G
rs32420899
MGI SNP Detail		 Chr15:100945979 Tssr136507 722 bp upstream
 SNP A/G A G G A G
rs224531103
MGI SNP Detail		 Chr15:100945988 Tssr136507 731 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251874725
MGI SNP Detail		 Chr15:100945997 Tssr136507 740 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260448392
MGI SNP Detail		 Chr15:100946037 Tssr136507 780 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G G G G G G G G G T G G G G
rs31775438
MGI SNP Detail		 Chr15:100946058 Tssr136507 801 bp upstream
 SNP G/T T G G T G
rs237577841
MGI SNP Detail		 Chr15:100946075 Tssr136507 818 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258106698
MGI SNP Detail		 Chr15:100946145 Tssr136507 888 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225562995
MGI SNP Detail		 Chr15:100946185 Tssr136507 928 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240959975
MGI SNP Detail		 Chr15:100946211 Tssr136507 954 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
rs32113645
MGI SNP Detail		 Chr15:100946230 Tssr136507 973 bp upstream
 SNP A/G G G A A G A
rs233800313
MGI SNP Detail		 Chr15:100946233 Tssr136507 976 bp upstream
 SNP A/T T T T T T T T T T T A A T T T T T T T A A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs259209688
MGI SNP Detail		 Chr15:100946276 Tssr136507 1019 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212849883
MGI SNP Detail		 Chr15:100946309 Tssr136507 1052 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223371212
MGI SNP Detail		 Chr15:100946509 Tssr136507 1252 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244482658
MGI SNP Detail		 Chr15:100946532 Tssr136507 1275 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214549443
MGI SNP Detail		 Chr15:100946576 Tssr136507 1319 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31581048
MGI SNP Detail		 Chr15:100946622 Tssr136507 1365 bp upstream
 SNP C/T C C T T C T
rs259504640
MGI SNP Detail		 Chr15:100946720 Tssr136507 1463 bp upstream
 SNP A/G G G G G G G G G G G A G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216259859
MGI SNP Detail		 Chr15:100946742 Tssr136507 1485 bp upstream
 SNP A/C C C C C C C C C C C A A C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs240442240
MGI SNP Detail		 Chr15:100946790 Tssr136507 1533 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C C C C C C C C C A C C C C
rs263974134
MGI SNP Detail		 Chr15:100946846 Tssr136507 1589 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
rs219229109
MGI SNP Detail		 Chr15:100946988 Tssr136507 1731 bp upstream
 SNP A/C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs230105024
MGI SNP Detail		 Chr15:100947059 Tssr136507 1802 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs587533010
MGI SNP Detail		 Chr15:100947109 Tssr136507 1852 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs252335436
MGI SNP Detail		 Chr15:100947180 Tssr136507 1923 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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