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Mouse SNP Summary
Symbol
Name
ID
Tssr137009
transcription start site region 137009
MGI:6064776

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215930368
MGI SNP Detail
Chr16:8646093 Tssr137009 1886 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs241208412
MGI SNP Detail
Chr16:8646119 Tssr137009 1860 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260317091
MGI SNP Detail
Chr16:8646164 Tssr137009 1815 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235138319
MGI SNP Detail
Chr16:8646228 Tssr137009 1751 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248067622
MGI SNP Detail
Chr16:8646251 Tssr137009 1728 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218508847
MGI SNP Detail
Chr16:8646281 Tssr137009 1698 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242974886
MGI SNP Detail
Chr16:8646314 Tssr137009 1665 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262344037
MGI SNP Detail
Chr16:8646350 Tssr137009 1629 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223975811
MGI SNP Detail
Chr16:8646375 Tssr137009 1604 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248542252
MGI SNP Detail
Chr16:8646399 Tssr137009 1580 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs260349266
MGI SNP Detail
Chr16:8646423 Tssr137009 1556 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs229564367
MGI SNP Detail
Chr16:8646461 Tssr137009 1518 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237596739
MGI SNP Detail
Chr16:8646481 Tssr137009 1498 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257125810
MGI SNP Detail
Chr16:8646507 Tssr137009 1472 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230597380
MGI SNP Detail
Chr16:8646527 Tssr137009 1452 bp upstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251751350
MGI SNP Detail
Chr16:8646538 Tssr137009 1441 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs216430876
MGI SNP Detail
Chr16:8646713 Rr325518 within coordinates of
Tssr137009 1266 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs232514801
MGI SNP Detail
Chr16:8646738 Rr325518 within coordinates of
Tssr137009 1241 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs579038240
MGI SNP Detail
Chr16:8646770 Rr325518 within coordinates of
Tssr137009 1209 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs246784519
MGI SNP Detail
Chr16:8646780 Rr325518 within coordinates of
Tssr137009 1199 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs582474104
MGI SNP Detail
Chr16:8646794 Rr325518 within coordinates of
Tssr137009 1185 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585176940
MGI SNP Detail
Chr16:8646822 Rr325518 within coordinates of
Tssr137009 1157 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs582391976
MGI SNP Detail
Chr16:8646831 Rr325518 within coordinates of
Tssr137009 1148 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C G C C C C C C G C C C C C C C C C C C C
rs217335569
MGI SNP Detail
Chr16:8646842 Rr325518 within coordinates of
Tssr137009 1137 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582033582
MGI SNP Detail
Chr16:8646844 Rr325518 within coordinates of
Tssr137009 1135 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235179335
MGI SNP Detail
Chr16:8646852 Rr325518 within coordinates of
Tssr137009 1127 bp upstream
SNP A/G G G G G G A G G G G
rs248187768
MGI SNP Detail
Chr16:8646871 Rr325518 within coordinates of
Tssr137009 1108 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212845570
MGI SNP Detail
Chr16:8646875 Rr325518 within coordinates of
Tssr137009 1104 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237949405
MGI SNP Detail
Chr16:8646878 Rr325518 within coordinates of
Tssr137009 1101 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257712013
MGI SNP Detail
Chr16:8646881 Rr325518 within coordinates of
Tssr137009 1098 bp upstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs223935831
MGI SNP Detail
Chr16:8646883 Rr325518 within coordinates of
Tssr137009 1096 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246028172
MGI SNP Detail
Chr16:8647009 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 970 bp upstream
SNP C/T C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C
rs254049761
MGI SNP Detail
Chr16:8647098 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 881 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs223206079
MGI SNP Detail
Chr16:8647125 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 854 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs236864923
MGI SNP Detail
Chr16:8647273 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 706 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579986003
MGI SNP Detail
Chr16:8647313 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 666 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs257159772
MGI SNP Detail
Chr16:8647346 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 633 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230458058
MGI SNP Detail
Chr16:8647355 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 624 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs4159742
MGI SNP Detail
Chr16:8647444 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 535 bp upstream
SNP C/T T C T T
rs263297827
MGI SNP Detail
Chr16:8647493 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 486 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233316932
MGI SNP Detail
Chr16:8647537 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Tssr137009 442 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs246818766
MGI SNP Detail
Chr16:8647591 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Rr370042 within coordinates of
Tssr137009 388 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs217430206
MGI SNP Detail
Chr16:8647888 Cpgi7943 within coordinates of
Rr325518 within coordinates of
Rr370042 within coordinates of
Tssr137009 91 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs223591937
MGI SNP Detail
Chr16:8647980 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs243134790
MGI SNP Detail
Chr16:8648030 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 24 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213259642
MGI SNP Detail
Chr16:8648107 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 101 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs236165457
MGI SNP Detail
Chr16:8648613 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 607 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs4159743
MGI SNP Detail
Chr16:8648721 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 715 bp downstream
SNP C/G C G G
rs215480802
MGI SNP Detail
Chr16:8648749 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 743 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234645076
MGI SNP Detail
Chr16:8648784 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 778 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254187347
MGI SNP Detail
Chr16:8648830 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 824 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223243467
MGI SNP Detail
Chr16:8648961 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 955 bp downstream
Tssr137010 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229697529
MGI SNP Detail
Chr16:8648972 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 966 bp downstream
Tssr137010 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs386869039
MGI SNP Detail
Chr16:8649158 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1152 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T C T T T T T T
rs250071139
MGI SNP Detail
Chr16:8649300 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1294 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222647472
MGI SNP Detail
Chr16:8649320 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1314 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244527158
MGI SNP Detail
Chr16:8649323 Cpgi7943 within coordinates of
Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1317 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585775209
MGI SNP Detail
Chr16:8649469 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1463 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46245160
MGI SNP Detail
Chr16:8649478 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1472 bp downstream
SNP A A A
rs583362021
MGI SNP Detail
Chr16:8649479 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1473 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225275067
MGI SNP Detail
Chr16:8649544 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1538 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241066312
MGI SNP Detail
Chr16:8649593 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1587 bp downstream
SNP A/G/T G G G G G G G G G G G G G G G G G G G A G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs260087659
MGI SNP Detail
Chr16:8649660 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1654 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223619630
MGI SNP Detail
Chr16:8649731 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1725 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs243168074
MGI SNP Detail
Chr16:8649766 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1760 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs262384286
MGI SNP Detail
Chr16:8649812 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1806 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230186800
MGI SNP Detail
Chr16:8649973 Hapstr1 within coordinates of
Rr325518 within coordinates of
Tssr137009 1967 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 67 of 67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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