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Mouse SNP Summary
Symbol
Name
ID
Tssr139752
transcription start site region 139752
MGI:6067519

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220206968
MGI SNP Detail
Alliance Variant
Chr16:3893723 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1919 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246782661
MGI SNP Detail
Alliance Variant
Chr16:3893726 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1916 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255145271
MGI SNP Detail
Alliance Variant
Chr16:3893731 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1911 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs221273527
MGI SNP Detail
Alliance Variant
Chr16:3893798 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1844 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs248181467
MGI SNP Detail
Alliance Variant
Chr16:3893803 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1839 bp downstream
SNP C/T T C
rs259556133
MGI SNP Detail
Alliance Variant
Chr16:3893813 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1829 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228021217
MGI SNP Detail
Alliance Variant
Chr16:3893900 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1742 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254267177
MGI SNP Detail
Alliance Variant
Chr16:3893963 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1679 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264969412
MGI SNP Detail
Alliance Variant
Chr16:3893995 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1647 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228006297
MGI SNP Detail
Alliance Variant
Chr16:3894104 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1538 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256607916
MGI SNP Detail
Alliance Variant
Chr16:3894140 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1502 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs213784597
MGI SNP Detail
Alliance Variant
Chr16:3894222 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1420 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs234976128
MGI SNP Detail
Alliance Variant
Chr16:3894243 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1399 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246534162
MGI SNP Detail
Alliance Variant
Chr16:3894275 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1367 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50036325
MGI SNP Detail
Alliance Variant
Chr16:3894304 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1338 bp downstream
SNP A/G A A A A A A A A A A A A A G A
rs242227439
MGI SNP Detail
Alliance Variant
Chr16:3894316 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1326 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256245696
MGI SNP Detail
Alliance Variant
Chr16:3894424 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1218 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50184783
MGI SNP Detail
Alliance Variant
Chr16:3894630 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 1012 bp downstream
SNP A/C A A A A A A C A A A C A A C A
rs584013272
MGI SNP Detail
Alliance Variant
Chr16:3894757 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 885 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs236825612
MGI SNP Detail
Alliance Variant
Chr16:3894769 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 873 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs249582351
MGI SNP Detail
Alliance Variant
Chr16:3894866 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 776 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221240094
MGI SNP Detail
Alliance Variant
Chr16:3895010 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 632 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238963452
MGI SNP Detail
Alliance Variant
Chr16:3895072 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 570 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259664239
MGI SNP Detail
Alliance Variant
Chr16:3895121 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 521 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs48552484
MGI SNP Detail
Alliance Variant
Chr16:3895138 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 504 bp downstream
SNP C/T T T T T T T C T T T C T T C T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244695446
MGI SNP Detail
Alliance Variant
Chr16:3895149 Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 493 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs262121080
MGI SNP Detail
Alliance Variant
Chr16:3895260 Cpgi7905 within coordinates of
Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 382 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228747559
MGI SNP Detail
Alliance Variant
Chr16:3895282 Cpgi7905 within coordinates of
Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 360 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244420375
MGI SNP Detail
Alliance Variant
Chr16:3895428 Cpgi7905 within coordinates of
Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 214 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257841309
MGI SNP Detail
Alliance Variant
Chr16:3895433 Cpgi7905 within coordinates of
Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 209 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228268412
MGI SNP Detail
Alliance Variant
Chr16:3895453 Cpgi7905 within coordinates of
Trap1 Intron
Trap1 Noncoding-Transcript-Variant
Tssr139752 189 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246654225
MGI SNP Detail
Alliance Variant
Chr16:3895650 Cpgi7905 within coordinates of
Rr370033 within coordinates of
Trap1 mRNA-UTR
Trap1 Noncoding-Transcript-Variant
Tssr139752 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs48666988
MGI SNP Detail
Alliance Variant
Chr16:3895651 Cpgi7905 within coordinates of
Rr370033 within coordinates of
Trap1 mRNA-UTR
Trap1 Noncoding-Transcript-Variant
Tssr139752 within coordinates of
SNP G/T T T T T T T T T T G T G T
rs585888471
MGI SNP Detail
Alliance Variant
Chr16:3895676 Cpgi7905 within coordinates of
Rr370033 within coordinates of
Trap1 mRNA-UTR
Trap1 Noncoding-Transcript-Variant
Tssr139752 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233184166
MGI SNP Detail
Alliance Variant
Chr16:3895698 Cpgi7905 within coordinates of
Rr370033 within coordinates of
Rr510763 within coordinates of
Trap1 Noncoding-Transcript-Variant
Tssr139752 3 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs254307864
MGI SNP Detail
Chr16:3895735 Cpgi7905 within coordinates of
Rr370033 within coordinates of
Rr510763 within coordinates of
Tssr139752 40 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs211990299
MGI SNP Detail
Chr16:3895781 Cpgi7905 within coordinates of
Rr510763 within coordinates of
Tssr139752 86 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs238990010
MGI SNP Detail
Chr16:3895837 Cpgi7905 within coordinates of
Rr510763 within coordinates of
Tssr139752 142 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G
rs249691691
MGI SNP Detail
Chr16:3895895 Cpgi7905 within coordinates of
Rr510763 within coordinates of
Tssr139752 200 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs215790232
MGI SNP Detail
Chr16:3895927 Cpgi7905 within coordinates of
Rr510763 within coordinates of
Rr510764 within coordinates of
Tssr139752 232 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs52120554
MGI SNP Detail
Chr16:3896154 Rr510763 within coordinates of
Tssr139752 459 bp upstream
SNP G/T G T G
rs232779131
MGI SNP Detail
Chr16:3896298 Tssr139752 603 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T T T T T
rs253008510
MGI SNP Detail
Chr16:3896479 Tssr139752 784 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225933267
MGI SNP Detail
Chr16:3896545 Tssr139752 850 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs241723539
MGI SNP Detail
Chr16:3896554 Tssr139752 859 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs227105947
MGI SNP Detail
Chr16:3896779 Tssr139752 1084 bp upstream
SNP A/T T A
rs582635084
MGI SNP Detail
Chr16:3896781 Tssr139752 1086 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs260636855
MGI SNP Detail
Chr16:3896825 Tssr139752 1130 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220881803
MGI SNP Detail
Chr16:3896838 Tssr139752 1143 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240074892
MGI SNP Detail
Chr16:3896860 Tssr139752 1165 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257958818
MGI SNP Detail
Chr16:3896866 Tssr139752 1171 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C
rs228248919
MGI SNP Detail
Chr16:3896901 Tssr139752 1206 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240836575
MGI SNP Detail
Chr16:3896902 Tssr139752 1207 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264489097
MGI SNP Detail
Chr16:3896958 Tssr139752 1263 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48899267
MGI SNP Detail
Chr16:3896963 Tssr139752 1268 bp upstream
SNP A/G G G G G G G A G G G A G G G G
rs249938547
MGI SNP Detail
Chr16:3897044 Tssr139752 1349 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212306479
MGI SNP Detail
Chr16:3897077 Tssr139752 1382 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586246094
MGI SNP Detail
Chr16:3897155 Tssr139752 1460 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580412129
MGI SNP Detail
Chr16:3897179 Tssr139752 1484 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4152476
MGI SNP Detail
Chr16:3897223 Tssr139752 1528 bp upstream
SNP A/G G G A G G
rs243794346
MGI SNP Detail
Chr16:3897364 Tssr139752 1669 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215947471
MGI SNP Detail
Chr16:3897383 Tssr139752 1688 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232702507
MGI SNP Detail
Chr16:3897391 Tssr139752 1696 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253087083
MGI SNP Detail
Chr16:3897686 Rr510765 within coordinates of
Tssr139752 1991 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 64 of 64

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory