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Mouse SNP Summary
Symbol
Name
ID 		Tssr139999
transcription start site region 139999
MGI:6067766

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212348779
MGI SNP Detail		 Chr16:10965997 Gm61125 within coordinates of
Tssr139999 2000 bp downstream
Zc3h7a within coordinates of
 SNP A/G A A A A A A A A A A G A A A A A A A G G A G G G A G G A G A A A G A A A A A A G A A A A A A A G A A G G
rs4161656
MGI SNP Detail		 Chr16:10966206 Gm61125 within coordinates of
Tssr139999 1791 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G A G G A G G G G G G A
rs244802076
MGI SNP Detail		 Chr16:10966332 Gm61125 within coordinates of
Tssr139999 1665 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214469068
MGI SNP Detail		 Chr16:10966338 Gm61125 within coordinates of
Tssr139999 1659 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239663272
MGI SNP Detail		 Chr16:10966347 Gm61125 within coordinates of
Tssr139999 1650 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs4161657
MGI SNP Detail		 Chr16:10966491 Gm61125 within coordinates of
Tssr139999 1506 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G A A G G G G G G
rs4161658
MGI SNP Detail		 Chr16:10966531 Gm61125 within coordinates of
Tssr139999 1466 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T C T C C T T C T T C C
rs46925756
MGI SNP Detail		 Chr16:10966564 Gm61125 within coordinates of
Tssr139999 1433 bp downstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
rs49871412
MGI SNP Detail		 Chr16:10966571 Gm61125 within coordinates of
Tssr139999 1426 bp downstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C T C C T C
rs4161659
MGI SNP Detail		 Chr16:10966592 Gm61125 within coordinates of
Tssr139999 1405 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G A
rs237375327
MGI SNP Detail		 Chr16:10966661 Gm61125 within coordinates of
Tssr139999 1336 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262370873
MGI SNP Detail		 Chr16:10966683 Gm61125 within coordinates of
Tssr139999 1314 bp downstream
Zc3h7a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223690623
MGI SNP Detail		 Chr16:10966702 Gm61125 within coordinates of
Tssr139999 1295 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263647018
MGI SNP Detail		 Chr16:10966911 Gm61125 within coordinates of
Tssr139999 1086 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234112238
MGI SNP Detail		 Chr16:10966927 Gm61125 within coordinates of
Tssr139999 1070 bp downstream
Zc3h7a within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs243126040
MGI SNP Detail		 Chr16:10966928 Gm61125 within coordinates of
Tssr139999 1069 bp downstream
Zc3h7a within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs4161660
MGI SNP Detail		 Chr16:10966938 Gm61125 within coordinates of
Tssr139999 1059 bp downstream
Zc3h7a within coordinates of
 SNP A/C C C C A
rs583633307
MGI SNP Detail		 Chr16:10966946 Gm61125 within coordinates of
Tssr139999 1051 bp downstream
Zc3h7a within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs4161661
MGI SNP Detail		 Chr16:10966949 Gm61125 within coordinates of
Tssr139999 1048 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T C
rs4161662
MGI SNP Detail		 Chr16:10966953 Gm61125 within coordinates of
Tssr139999 1044 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G A
rs587317357
MGI SNP Detail		 Chr16:10966954 Gm61125 within coordinates of
Tssr139999 1043 bp downstream
Zc3h7a within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs4161663
MGI SNP Detail		 Chr16:10966973 Gm61125 within coordinates of
Tssr139999 1024 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T C
rs231485931
MGI SNP Detail		 Chr16:10967025 Gm61125 within coordinates of
Tssr139999 972 bp downstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257916067
MGI SNP Detail		 Chr16:10967087 Gm61125 within coordinates of
Tssr139999 910 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs4161664
MGI SNP Detail		 Chr16:10967100 Gm61125 within coordinates of
Tssr139999 897 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T C T C C T T C T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47170353
MGI SNP Detail		 Chr16:10967126 Gm61125 within coordinates of
Tssr139999 871 bp downstream
Zc3h7a within coordinates of
 SNP A/G A A A A A G A G A A A A A A G
rs242311978
MGI SNP Detail		 Chr16:10967270 Gm61125 within coordinates of
Tssr139999 727 bp downstream
Zc3h7a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs51074806
MGI SNP Detail		 Chr16:10967277 Gm61125 within coordinates of
Tssr139999 720 bp downstream
Zc3h7a within coordinates of
 SNP A/G A G A A G A A G A A A
rs231368418
MGI SNP Detail		 Chr16:10967298 Gm61125 within coordinates of
Tssr139999 699 bp downstream
Zc3h7a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257751039
MGI SNP Detail		 Chr16:10967301 Gm61125 within coordinates of
Tssr139999 696 bp downstream
Zc3h7a within coordinates of
 SNP C/G G G G G G G G G G G C C G G G G G G G G C G G C C G C G G C G G G G G G G G G G G G G G G G G G G G G C G
rs223983806
MGI SNP Detail		 Chr16:10967376 Gm61125 within coordinates of
Tssr139999 621 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238103915
MGI SNP Detail		 Chr16:10967505 Gm61125 within coordinates of
Tssr139999 492 bp downstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263454911
MGI SNP Detail		 Chr16:10967556 Gm61125 within coordinates of
Tssr139999 441 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222784434
MGI SNP Detail		 Chr16:10967592 Gm61125 within coordinates of
Tssr139999 405 bp downstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242812071
MGI SNP Detail		 Chr16:10967602 Gm61125 within coordinates of
Tssr139999 395 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581439582
MGI SNP Detail		 Chr16:10967666 Gm61125 within coordinates of
Tssr139999 331 bp downstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4161665
MGI SNP Detail		 Chr16:10967667 Gm61125 within coordinates of
Tssr139999 330 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G A
rs219209655
MGI SNP Detail		 Chr16:10967669 Gm61125 within coordinates of
Tssr139999 328 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs239237501
MGI SNP Detail		 Chr16:10967713 Gm61125 within coordinates of
Tssr139999 284 bp downstream
Zc3h7a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262912838
MGI SNP Detail		 Chr16:10967752 Gm61125 within coordinates of
Tssr139999 245 bp downstream
Zc3h7a within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs232443639
MGI SNP Detail		 Chr16:10967779 Gm61125 within coordinates of
Tssr139999 218 bp downstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs578814197
MGI SNP Detail		 Chr16:10967998 Gm61125 within coordinates of
Tssr139999 within coordinates of
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252970121
MGI SNP Detail		 Chr16:10968096 Gm61125 within coordinates of
Tssr139999 95 bp upstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265859418
MGI SNP Detail		 Chr16:10968097 Gm61125 within coordinates of
Tssr139999 96 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52621853
MGI SNP Detail		 Chr16:10968150 Gm61125 within coordinates of
Tssr139999 149 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C T C C C C C C C
rs580556656
MGI SNP Detail		 Chr16:10968194 Gm61125 within coordinates of
Tssr139999 193 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242023897
MGI SNP Detail		 Chr16:10968206 Gm61125 within coordinates of
Tssr139999 205 bp upstream
Zc3h7a within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A C C C C C C A C C C C C C C C C C C C
rs584402645
MGI SNP Detail		 Chr16:10968221 Gm61125 within coordinates of
Tssr139999 220 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579136487
MGI SNP Detail		 Chr16:10968287 Gm61125 within coordinates of
Tssr139999 286 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212519482
MGI SNP Detail		 Chr16:10968290 Gm61125 within coordinates of
Tssr139999 289 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50020010
MGI SNP Detail		 Chr16:10968354 Gm61125 within coordinates of
Tssr139999 353 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G A G G G G
rs582902735
MGI SNP Detail		 Chr16:10968367 Gm61125 within coordinates of
Tssr139999 366 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs4161666
MGI SNP Detail		 Chr16:10968401 Gm61125 within coordinates of
Tssr139999 400 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C T C C T C C C C C C T
rs4161667
MGI SNP Detail		 Chr16:10968428 Gm61125 within coordinates of
Tssr139999 427 bp upstream
Zc3h7a within coordinates of
 SNP A/C C C C A
rs4161668
MGI SNP Detail		 Chr16:10968547 Tssr139999 546 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C T T C C T C C T T
rs240840791
MGI SNP Detail		 Chr16:10968585 Tssr139999 584 bp upstream
Zc3h7a within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259659108
MGI SNP Detail		 Chr16:10968792 Tssr139999 791 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222878371
MGI SNP Detail		 Chr16:10968795 Tssr139999 794 bp upstream
Zc3h7a within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs4161669
MGI SNP Detail		 Chr16:10968870 Tssr139999 869 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C T
rs4161670
MGI SNP Detail		 Chr16:10968872 Tssr139999 871 bp upstream
Zc3h7a within coordinates of
 SNP A/G A A A A A A A A G G A A G A A G G
rs218887461
MGI SNP Detail		 Chr16:10969091 Tssr139999 1090 bp upstream
Zc3h7a within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs4161671
MGI SNP Detail		 Chr16:10969093 Tssr139999 1092 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C T C C T C C C C C C T
rs586488002
MGI SNP Detail		 Chr16:10969238 Tssr139999 1237 bp upstream
Zc3h7a within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs49975803
MGI SNP Detail		 Chr16:10969322 Tssr139999 1321 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G A G G G
rs49613982
MGI SNP Detail		 Chr16:10969325 Tssr139999 1324 bp upstream
Zc3h7a within coordinates of
 SNP A/G G G G G G G G G G G G G G A G
rs249507922
MGI SNP Detail		 Chr16:10969353 Tssr139999 1352 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48267192
MGI SNP Detail		 Chr16:10969365 Tssr139999 1364 bp upstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T T T T T C T T C T
rs229038083
MGI SNP Detail		 Chr16:10969418 Tssr139999 1417 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4161672
MGI SNP Detail		 Chr16:10969506 Tssr139999 1505 bp upstream
Zc3h7a within coordinates of
 SNP C/T T T T T T T C T C C T T C T T C C
rs47178606
MGI SNP Detail		 Chr16:10969668 Tssr139999 1667 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C T C T C C C C C C T
rs224918806
MGI SNP Detail		 Chr16:10969749 Tssr139999 1748 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251526268
MGI SNP Detail		 Chr16:10969858 Tssr139999 1857 bp upstream
Zc3h7a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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