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Mouse SNP Summary
Symbol
Name
ID 		Tssr141610
transcription start site region 141610
MGI:6069377

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256713485
MGI SNP Detail		 Chr16:57573217 Col8a1 within coordinates of
Tssr141610 1853 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs46437063
MGI SNP Detail		 Chr16:57573235 Col8a1 within coordinates of
Tssr141610 1835 bp downstream
 SNP A/G A A A A G G
rs243449323
MGI SNP Detail		 Chr16:57573254 Col8a1 within coordinates of
Tssr141610 1816 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45919703
MGI SNP Detail		 Chr16:57573375 Col8a1 within coordinates of
Tssr141610 1695 bp downstream
 SNP A/C C A C C A C C A A A A
rs235099612
MGI SNP Detail		 Chr16:57573378 Col8a1 within coordinates of
Tssr141610 1692 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs252400670
MGI SNP Detail		 Chr16:57573382 Col8a1 within coordinates of
Tssr141610 1688 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217391556
MGI SNP Detail		 Chr16:57573429 Col8a1 within coordinates of
Tssr141610 1641 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213694802
MGI SNP Detail		 Chr16:57573519 Col8a1 within coordinates of
Tssr141610 1551 bp downstream
 SNP C/T C T
rs46838806
MGI SNP Detail		 Chr16:57573555 Col8a1 within coordinates of
Tssr141610 1515 bp downstream
 SNP C/T T T T T C T T C C C C
rs214309988
MGI SNP Detail		 Chr16:57573653 Col8a1 within coordinates of
Tssr141610 1417 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229861447
MGI SNP Detail		 Chr16:57573674 Col8a1 within coordinates of
Tssr141610 1396 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586811767
MGI SNP Detail		 Chr16:57573712 Col8a1 within coordinates of
Tssr141610 1358 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46097492
MGI SNP Detail		 Chr16:57573727 Col8a1 within coordinates of
Tssr141610 1343 bp downstream
 SNP A/G A A A A A A A A A A G
rs225434528
MGI SNP Detail		 Chr16:57573776 Col8a1 within coordinates of
Tssr141610 1294 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250767145
MGI SNP Detail		 Chr16:57573815 Col8a1 within coordinates of
Tssr141610 1255 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258384483
MGI SNP Detail		 Chr16:57573891 Col8a1 within coordinates of
Tssr141610 1179 bp downstream
 SNP C/T C C C C T C C C T T T T C C C C C C C C C C C C C C C C T C C T T C T C C C C T C C C T T C C C C C C C C
rs224924385
MGI SNP Detail		 Chr16:57573986 Col8a1 within coordinates of
Tssr141610 1084 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237827761
MGI SNP Detail		 Chr16:57574051 Col8a1 within coordinates of
Tssr141610 1019 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256602853
MGI SNP Detail		 Chr16:57574128 Col8a1 within coordinates of
Tssr141610 942 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs223759183
MGI SNP Detail		 Chr16:57574153 Col8a1 within coordinates of
Tssr141610 917 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237077417
MGI SNP Detail		 Chr16:57574161 Col8a1 within coordinates of
Tssr141610 909 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266025354
MGI SNP Detail		 Chr16:57574197 Col8a1 within coordinates of
Tssr141610 873 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233904672
MGI SNP Detail		 Chr16:57574200 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 870 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257362932
MGI SNP Detail		 Chr16:57574215 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 855 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216887782
MGI SNP Detail		 Chr16:57574236 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 834 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48972576
MGI SNP Detail		 Chr16:57574246 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 824 bp downstream
 SNP C/G G G G C G G C C C C
rs245914366
MGI SNP Detail		 Chr16:57574247 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 823 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214269199
MGI SNP Detail		 Chr16:57574249 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 821 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580642683
MGI SNP Detail		 Chr16:57574314 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 756 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs48679361
MGI SNP Detail		 Chr16:57574340 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 730 bp downstream
 SNP C/T C C C C T C C T T T T
rs583895603
MGI SNP Detail		 Chr16:57574745 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 325 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586707927
MGI SNP Detail		 Chr16:57574746 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 324 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244206583
MGI SNP Detail		 Chr16:57574932 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 138 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218093228
MGI SNP Detail		 Chr16:57574955 Col8a1 within coordinates of
Rr325435 within coordinates of
Tssr141610 115 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239944018
MGI SNP Detail		 Chr16:57575033 Col8a1 within coordinates of
Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 37 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262727998
MGI SNP Detail		 Chr16:57575177 Cpgi8340 within coordinates of
Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 90 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs4189608
MGI SNP Detail		 Chr16:57575267 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 180 bp upstream
 SNP A/G A G A A G
rs231202686
MGI SNP Detail		 Chr16:57575269 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 182 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G
rs250301895
MGI SNP Detail		 Chr16:57575441 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 354 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs218162079
MGI SNP Detail		 Chr16:57575506 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 419 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249458637
MGI SNP Detail		 Chr16:57575541 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 454 bp upstream
 SNP A/T A T
rs223182524
MGI SNP Detail		 Chr16:57575550 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 463 bp upstream
 SNP A/G G A
rs4189609
MGI SNP Detail		 Chr16:57575559 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 472 bp upstream
 SNP A/C A C A A A
rs256102535
MGI SNP Detail		 Chr16:57575571 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 484 bp upstream
 SNP C/T C T
rs265729849
MGI SNP Detail		 Chr16:57575582 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 495 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47508959
MGI SNP Detail		 Chr16:57575691 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 604 bp upstream
 SNP A/G G G G A
rs4189610
MGI SNP Detail		 Chr16:57575714 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 627 bp upstream
 SNP A/G G A G G G
rs51639471
MGI SNP Detail		 Chr16:57575755 Gm59826 within coordinates of
Rr325435 within coordinates of
Tssr141610 668 bp upstream
 SNP C/G G G G G G C G G C C G C
rs4189611
MGI SNP Detail		 Chr16:57576049 Rr325435 within coordinates of
Tssr141610 962 bp upstream
 SNP C/T C T C C
rs254043883
MGI SNP Detail		 Chr16:57576137 Rr325435 within coordinates of
Tssr141610 1050 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217932539
MGI SNP Detail		 Chr16:57576145 Rr325435 within coordinates of
Tssr141610 1058 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47531057
MGI SNP Detail		 Chr16:57576152 Rr325435 within coordinates of
Tssr141610 1065 bp upstream
 SNP A/G A A A A G A A G G G G
rs252277213
MGI SNP Detail		 Chr16:57576167 Rr325435 within coordinates of
Tssr141610 1080 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs580725634
MGI SNP Detail		 Chr16:57576202 Rr325435 within coordinates of
Tssr141610 1115 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4189612
MGI SNP Detail		 Chr16:57576322 Rr325435 within coordinates of
Tssr141610 1235 bp upstream
 SNP A/G G A A G G A A G G G G
rs231136140
MGI SNP Detail		 Chr16:57576402 Tssr141610 1315 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250231138
MGI SNP Detail		 Chr16:57576405 Tssr141610 1318 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs45758428
MGI SNP Detail		 Chr16:57576492 Tssr141610 1405 bp upstream
 SNP A/G G G G G G G G G A A A
rs217781581
MGI SNP Detail		 Chr16:57576493 Tssr141610 1406 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231110825
MGI SNP Detail		 Chr16:57576603 Tssr141610 1516 bp upstream
 SNP A/G A G
rs252967705
MGI SNP Detail		 Chr16:57576734 Tssr141610 1647 bp upstream
 SNP C/G G C
rs213065305
MGI SNP Detail		 Chr16:57576738 Tssr141610 1651 bp upstream
 SNP C/T T C
rs248391089
MGI SNP Detail		 Chr16:57576815 Tssr141610 1728 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234417572
MGI SNP Detail		 Chr16:57576850 Tssr141610 1763 bp upstream
 SNP C C C
rs52416781
MGI SNP Detail		 Chr16:57576909 Tssr141610 1822 bp upstream
 SNP C/T T C
rs582873542
MGI SNP Detail		 Chr16:57576991 Tssr141610 1904 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 66 of 66
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory