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Mouse SNP Summary
Symbol
Name
ID
Tssr142440
transcription start site region 142440
MGI:6070207

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578977734
MGI SNP Detail
Chr17:5889752 Gm65455 within coordinates of
Tssr142440 1830 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs582462607
MGI SNP Detail
Chr17:5889837 Gm65455 within coordinates of
Tssr142440 1745 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586322542
MGI SNP Detail
Chr17:5890064 Gm65455 within coordinates of
Tssr142440 1518 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580337594
MGI SNP Detail
Chr17:5890092 Gm65455 within coordinates of
Tssr142440 1490 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584079448
MGI SNP Detail
Chr17:5890209 Gm65471 within coordinates of
Tssr142440 1373 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585458713
MGI SNP Detail
Chr17:5890215 Gm65471 within coordinates of
Tssr142440 1367 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579623597
MGI SNP Detail
Chr17:5890245 Gm65471 within coordinates of
Tssr142440 1337 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs583306326
MGI SNP Detail
Chr17:5890246 Gm65471 within coordinates of
Tssr142440 1336 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586638748
MGI SNP Detail
Chr17:5890315 Gm65471 within coordinates of
Tssr142440 1267 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs581276354
MGI SNP Detail
Chr17:5890377 Gm65471 within coordinates of
Tssr142440 1205 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583606126
MGI SNP Detail
Chr17:5890417 Gm65471 within coordinates of
Tssr142440 1165 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs587217761
MGI SNP Detail
Chr17:5890455 Gm65471 within coordinates of
Tssr142440 1127 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581617496
MGI SNP Detail
Chr17:5890484 Gm65471 within coordinates of
Tssr142440 1098 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs585296412
MGI SNP Detail
Chr17:5890554 Gm65471 within coordinates of
Tssr142440 1028 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578351304
MGI SNP Detail
Chr17:5890618 Gm65471 within coordinates of
Tssr142440 964 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs580760473
MGI SNP Detail
Chr17:5890628 Gm65471 within coordinates of
Tssr142440 954 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs584515100
MGI SNP Detail
Chr17:5890725 Gm65471 within coordinates of
Tssr142440 857 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C C C C A C C C C
rs578825323
MGI SNP Detail
Chr17:5890774 Gm65471 within coordinates of
Tssr142440 808 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582206538
MGI SNP Detail
Chr17:5890866 Gm65471 within coordinates of
Tssr142440 716 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586040977
MGI SNP Detail
Chr17:5890873 Gm65471 within coordinates of
Tssr142440 709 bp upstream
SNP C/T C C C T T T T T T T T T T T T T C C T C T T C T T C T C T C T T T C T C T T C T C T T T T T C T C C C C C
rs579054036
MGI SNP Detail
Chr17:5890970 Gm65471 within coordinates of
Tssr142440 612 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582772737
MGI SNP Detail
Chr17:5890985 Gm65471 within coordinates of
Tssr142440 597 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs586534053
MGI SNP Detail
Chr17:5891008 Gm65471 within coordinates of
Tssr142440 574 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579542133
MGI SNP Detail
Chr17:5891172 Cpgi8560 within coordinates of
Gm65471 within coordinates of
Tssr142440 410 bp upstream
SNP A/T T T T T T T T T T T T T T T T T A A T A T T T T T T T T T T T T A T T T T A T T T T T T T T T A T T T
rs583025686
MGI SNP Detail
Chr17:5891207 Cpgi8560 within coordinates of
Gm65471 within coordinates of
Tssr142440 375 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585720494
MGI SNP Detail
Chr17:5891321 Cpgi8560 within coordinates of
Gm65471 within coordinates of
Tssr142440 261 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579663772
MGI SNP Detail
Chr17:5891322 Cpgi8560 within coordinates of
Gm65471 within coordinates of
Tssr142440 260 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C C C C C C C
rs583429433
MGI SNP Detail
Chr17:5891337 Cpgi8560 within coordinates of
Gm65471 within coordinates of
Tssr142440 245 bp upstream
SNP C/T C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C T C C C C C C C C C C T C C T T C C
rs587144036
MGI SNP Detail
Chr17:5891466 Gm65471 within coordinates of
Tssr142440 116 bp upstream
SNP A/G G G G G G G G G G G G G G G A G G A G G G G G G A G G G G G G G
rs581503617
MGI SNP Detail
Chr17:5891476 Gm65471 within coordinates of
Tssr142440 106 bp upstream
SNP A/G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G A G
rs583990507
MGI SNP Detail
Chr17:5891523 Gm65471 within coordinates of
Tssr142440 59 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs587519081
MGI SNP Detail
Chr17:5891675 Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 23 bp downstream
Tssr142441 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs580711901
MGI SNP Detail
Chr17:5891728 Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 76 bp downstream
Tssr142442 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G
rs583909033
MGI SNP Detail
Chr17:5891846 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 194 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs586672596
MGI SNP Detail
Chr17:5891848 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 196 bp downstream
SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs108619893
MGI SNP Detail
Chr17:5892033 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 381 bp downstream
SNP C/G C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580839990
MGI SNP Detail
Chr17:5892047 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 395 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs584709642
MGI SNP Detail
Chr17:5892048 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 396 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs578937044
MGI SNP Detail
Chr17:5892063 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 411 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A
rs582657744
MGI SNP Detail
Chr17:5892106 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 454 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585220810
MGI SNP Detail
Chr17:5892124 Cpgi8561 within coordinates of
Gm65471 within coordinates of
Snx9 within coordinates of
Tssr142440 472 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579381013
MGI SNP Detail
Chr17:5892195 Cpgi8561 within coordinates of
Snx9 within coordinates of
Tssr142440 543 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs582783483
MGI SNP Detail
Chr17:5892248 Snx9 within coordinates of
Tssr142440 596 bp downstream
SNP G/T G G T T T T T T T T T T T T T T T T G T T G T T G T G T G T T T G T T T T T T G T T T T T T T G T T G
rs585032040
MGI SNP Detail
Chr17:5892383 Snx9 within coordinates of
Tssr142440 731 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579637464
MGI SNP Detail
Chr17:5892525 Snx9 within coordinates of
Tssr142440 873 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs582226872
MGI SNP Detail
Chr17:5892536 Snx9 within coordinates of
Tssr142440 884 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585898467
MGI SNP Detail
Chr17:5892557 Snx9 within coordinates of
Tssr142440 905 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580201373
MGI SNP Detail
Chr17:5892586 Snx9 within coordinates of
Tssr142440 934 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583878714
MGI SNP Detail
Chr17:5892665 Snx9 within coordinates of
Tssr142440 1013 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587249457
MGI SNP Detail
Chr17:5892677 Snx9 within coordinates of
Tssr142440 1025 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580265957
MGI SNP Detail
Chr17:5892739 Snx9 within coordinates of
Tssr142440 1087 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs584002730
MGI SNP Detail
Chr17:5892846 Snx9 within coordinates of
Tssr142440 1194 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29522684
MGI SNP Detail
Chr17:5892880 Snx9 within coordinates of
Tssr142440 1228 bp downstream
SNP A/T T A A A
rs33539922
MGI SNP Detail
Chr17:5892983 Snx9 within coordinates of
Tssr142440 1331 bp downstream
SNP A/G A G G G
rs586174407
MGI SNP Detail
Chr17:5893078 Snx9 within coordinates of
Tssr142440 1426 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs580797066
MGI SNP Detail
Chr17:5893142 Snx9 within coordinates of
Tssr142440 1490 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs584600009
MGI SNP Detail
Chr17:5893233 Snx9 within coordinates of
Tssr142440 1581 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs587178976
MGI SNP Detail
Chr17:5893273 Snx9 within coordinates of
Tssr142440 1621 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581340579
MGI SNP Detail
Chr17:5893291 Snx9 within coordinates of
Tssr142440 1639 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs584800811
MGI SNP Detail
Chr17:5893292 Snx9 within coordinates of
Tssr142440 1640 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579041305
MGI SNP Detail
Chr17:5893323 Snx9 within coordinates of
Tssr142440 1671 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582562745
MGI SNP Detail
Chr17:5893383 Snx9 within coordinates of
Tssr142440 1731 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585228599
MGI SNP Detail
Chr17:5893443 Snx9 within coordinates of
Tssr142440 1791 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578366341
MGI SNP Detail
Chr17:5893567 Snx9 within coordinates of
Tssr142440 1915 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582121198
MGI SNP Detail
Chr17:5893597 Snx9 within coordinates of
Tssr142440 1945 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 65 of 65

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory

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