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Mouse SNP Summary
Symbol
Name
ID 		Tssr142879
transcription start site region 142879
MGI:6070646

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Showing SNP(s) 1 - 51 of 51

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222389413
MGI SNP Detail		 Chr17:21693193 Rr392397 within coordinates of
Tssr142879 1976 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6361739
MGI SNP Detail		 Chr17:21693221 Rr392397 within coordinates of
Tssr142879 1948 bp upstream
 SNP A/G G A
rs108486383
MGI SNP Detail		 Chr17:21693318 Rr392397 within coordinates of
Tssr142879 1851 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs227024542
MGI SNP Detail		 Chr17:21693327 Rr392397 within coordinates of
Tssr142879 1842 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241848856
MGI SNP Detail		 Chr17:21693351 Rr392397 within coordinates of
Tssr142879 1818 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6362763
MGI SNP Detail		 Chr17:21693378 Rr392397 within coordinates of
Tssr142879 1791 bp upstream
 SNP C/G C G
rs6362825
MGI SNP Detail		 Chr17:21693422 Rr392397 within coordinates of
Tssr142879 1747 bp upstream
 SNP A/T T A
rs240639903
MGI SNP Detail		 Chr17:21693426 Rr392397 within coordinates of
Tssr142879 1743 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6363363
MGI SNP Detail		 Chr17:21693512 Rr392397 within coordinates of
Tssr142879 1657 bp upstream
 SNP A/T T T A A A T T T A T T A A T A A
rs230244190
MGI SNP Detail		 Chr17:21693551 Rr392397 within coordinates of
Tssr142879 1618 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254378454
MGI SNP Detail		 Chr17:21693606 Rr392397 within coordinates of
Tssr142879 1563 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs212171480
MGI SNP Detail		 Chr17:21693665 Rr392397 within coordinates of
Tssr142879 1504 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229488080
MGI SNP Detail		 Chr17:21693681 Rr392397 within coordinates of
Tssr142879 1488 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246908567
MGI SNP Detail		 Chr17:21693708 Rr392397 within coordinates of
Tssr142879 1461 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs47912750
MGI SNP Detail		 Chr17:21693714 Rr392397 within coordinates of
Tssr142879 1455 bp upstream
 SNP C/G C C C C C C C C C C C C C C G
rs233186555
MGI SNP Detail		 Chr17:21693718 Rr392397 within coordinates of
Tssr142879 1451 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257578035
MGI SNP Detail		 Chr17:21693749 Rr392397 within coordinates of
Tssr142879 1420 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47683028
MGI SNP Detail		 Chr17:21693792 Rr392397 within coordinates of
Tssr142879 1377 bp upstream
 SNP C/T C C C C T
rs49079990
MGI SNP Detail		 Chr17:21693797 Rr392397 within coordinates of
Tssr142879 1372 bp upstream
 SNP C/T C C C T C T T C C T C C C T T C T C
rs108489819
MGI SNP Detail		 Chr17:21693909 Rr392397 within coordinates of
Tssr142879 1260 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G
rs108793419
MGI SNP Detail		 Chr17:21693913 Rr392397 within coordinates of
Tssr142879 1256 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs51042814
MGI SNP Detail		 Chr17:21693997 Rr392397 within coordinates of
Tssr142879 1172 bp upstream
 SNP A/G A A A A A A G A A A G A A A A
rs49833186
MGI SNP Detail		 Chr17:21694281 Gm52290 within coordinates of
Rr392397 within coordinates of
Tssr142879 888 bp upstream
 SNP G G G G
rs584583096
MGI SNP Detail		 Chr17:21694322 Gm52290 within coordinates of
Rr392397 within coordinates of
Tssr142879 847 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221036058
MGI SNP Detail		 Chr17:21694346 Gm52290 within coordinates of
Rr392397 within coordinates of
Tssr142879 823 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239672573
MGI SNP Detail		 Chr17:21694541 Gm52290 within coordinates of
Rr392397 within coordinates of
Tssr142879 628 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs107910871
MGI SNP Detail		 Chr17:21695004 Gm52290 within coordinates of
Rr392397 within coordinates of
Tssr142879 165 bp upstream
 SNP C C
rs51266309
MGI SNP Detail		 Chr17:21695024 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 145 bp upstream
 SNP A A
rs45847517
MGI SNP Detail		 Chr17:21695026 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 143 bp upstream
 SNP A A
rs108756428
MGI SNP Detail		 Chr17:21695096 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 73 bp upstream
 SNP A A A
rs45678421
MGI SNP Detail		 Chr17:21695107 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 62 bp upstream
 SNP G G
rs31857008
MGI SNP Detail		 Chr17:21695122 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 47 bp upstream
 SNP A/G A A G A
rs31381597
MGI SNP Detail		 Chr17:21695203 Gm52290 within coordinates of
Gm56906 within coordinates of
Rr392397 within coordinates of
Tssr142879 19 bp downstream
 SNP A/G G G A G
rs107922241
MGI SNP Detail		 Chr17:21695288 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 104 bp downstream
 SNP A A
rs578545745
MGI SNP Detail		 Chr17:21695306 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 122 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581836555
MGI SNP Detail		 Chr17:21695327 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 143 bp downstream
 SNP A/G A A A A A G G G A A G A A A A A A
rs586457940
MGI SNP Detail		 Chr17:21695342 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 158 bp downstream
 SNP C/T C C C C C C C T T T T T C C C C C T
rs108645520
MGI SNP Detail		 Chr17:21695526 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 342 bp downstream
 SNP A A
rs583567492
MGI SNP Detail		 Chr17:21695764 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 580 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A T A A A A A A A T A A A A T A A A A T A A A A A A A A
rs585770667
MGI SNP Detail		 Chr17:21695768 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 584 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs108186065
MGI SNP Detail		 Chr17:21695840 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 656 bp downstream
 SNP A A
rs108657185
MGI SNP Detail		 Chr17:21695845 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 661 bp downstream
 SNP A A
rs579693913
MGI SNP Detail		 Chr17:21695849 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 665 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs583024078
MGI SNP Detail		 Chr17:21695855 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 671 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587479580
MGI SNP Detail		 Chr17:21695920 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 736 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581410448
MGI SNP Detail		 Chr17:21695938 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 754 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583913849
MGI SNP Detail		 Chr17:21696274 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 1090 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs107768270
MGI SNP Detail		 Chr17:21696801 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 1617 bp downstream
 SNP A A A
rs108715618
MGI SNP Detail		 Chr17:21696803 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 1619 bp downstream
 SNP A/G G G A
rs108121221
MGI SNP Detail		 Chr17:21696836 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 1652 bp downstream
 SNP A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586897188
MGI SNP Detail		 Chr17:21697151 Gm52290 within coordinates of
Gm56906 within coordinates of
Tssr142879 1967 bp downstream
 SNP A/C A A A A C A A A A A C C A A A A A A A A C A A A A C C A A A A A A A C A A A A C A A C A C A C A A A
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Showing SNP(s) 1 - 51 of 51
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory