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Mouse SNP Summary
Symbol
Name
ID 		Tssr142942
transcription start site region 142942
MGI:6070709

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580155329
MGI SNP Detail		 Chr17:23891001 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1963 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583723657
MGI SNP Detail		 Chr17:23891004 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1960 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs108829768
MGI SNP Detail		 Chr17:23891041 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1923 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A A A A G G A G G G G A G G G G G A G G G G G A A G G G G G G G G G G G G
rs52327436
MGI SNP Detail		 Chr17:23891054 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1910 bp upstream
 SNP A/C C C C A
rs223289667
MGI SNP Detail		 Chr17:23891332 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1632 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33447499
MGI SNP Detail		 Chr17:23891359 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1605 bp upstream
 SNP A/G G A G G A
rs33392775
MGI SNP Detail		 Chr17:23891361 Rr329688 within coordinates of
Thoc6 within coordinates of
Tssr142942 1603 bp upstream
 SNP C/T C T C C T
rs52589343
MGI SNP Detail		 Chr17:23891521 Thoc6 within coordinates of
Tssr142942 1443 bp upstream
 SNP C/T T T T C
rs242670848
MGI SNP Detail		 Chr17:23891584 Thoc6 within coordinates of
Tssr142942 1380 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33207674
MGI SNP Detail		 Chr17:23891709 Thoc6 within coordinates of
Tssr142942 1255 bp upstream
 SNP C/T T T T T C C
rs48076208
MGI SNP Detail		 Chr17:23891726 Thoc6 within coordinates of
Tssr142942 1238 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A A A A G G A G G G G A G G G G G A G G G G G A A G G G G G G G G G G G G
rs49295251
MGI SNP Detail		 Chr17:23891751 Thoc6 within coordinates of
Tssr142942 1213 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T A A A T T T A T T T T A T T T T T A T T T T T A A T T T T T T T T T T T T
rs33254109
MGI SNP Detail		 Chr17:23891755 Thoc6 within coordinates of
Tssr142942 1209 bp upstream
 SNP A/G G G G G G A
rs33713442
MGI SNP Detail		 Chr17:23891830 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 1134 bp upstream
 SNP A/G G G G G A A
rs249653860
MGI SNP Detail		 Chr17:23891928 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 1036 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211871814
MGI SNP Detail		 Chr17:23891955 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 1009 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223693877
MGI SNP Detail		 Chr17:23892053 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 911 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247719130
MGI SNP Detail		 Chr17:23892113 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 851 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs216972902
MGI SNP Detail		 Chr17:23892271 Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 693 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs239062744
MGI SNP Detail		 Chr17:23892408 Cpgi8682 within coordinates of
Rr339270 within coordinates of
Thoc6 within coordinates of
Tssr142942 556 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263135226
MGI SNP Detail		 Chr17:23892597 Cpgi8682 within coordinates of
Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Rr405075 within coordinates of
Thoc6 within coordinates of
Tssr142940 within coordinates of
Tssr142942 367 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214838097
MGI SNP Detail		 Chr17:23892864 Cpgi8682 within coordinates of
Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 100 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs108170765
MGI SNP Detail		 Chr17:23892868 Cpgi8682 within coordinates of
Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 96 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A A A A G G A G G G G A G G G G G A G G G G G A A G G G G G G G G G G G
rs250597810
MGI SNP Detail		 Chr17:23892901 Cpgi8682 within coordinates of
Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142941 within coordinates of
Tssr142942 63 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218333048
MGI SNP Detail		 Chr17:23893316 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 341 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33609674
MGI SNP Detail		 Chr17:23893507 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 532 bp downstream
 SNP A/G G G A G G A
rs254272084
MGI SNP Detail		 Chr17:23893556 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 581 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs4231343
MGI SNP Detail		 Chr17:23893812 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 837 bp downstream
 SNP A/G A A A G A
rs245187647
MGI SNP Detail		 Chr17:23893855 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 880 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs4231344
MGI SNP Detail		 Chr17:23893936 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 961 bp downstream
 SNP A/G A A A G A A G G G A G G G G G A G A A G G G G A A A G G G A A G A G G G A A G G G G G A G A
rs4231345
MGI SNP Detail		 Chr17:23893982 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 1007 bp downstream
 SNP G/T G G G T G
rs4231346
MGI SNP Detail		 Chr17:23893996 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 1021 bp downstream
 SNP A/G A A A G A
rs253670567
MGI SNP Detail		 Chr17:23894027 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 1052 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229035246
MGI SNP Detail		 Chr17:23894107 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 1132 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247664327
MGI SNP Detail		 Chr17:23894122 Hcfc1r1 within coordinates of
Rr339270 within coordinates of
Tssr142942 1147 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs46526925
MGI SNP Detail		 Chr17:23894210 Rr339270 within coordinates of
Tssr142942 1235 bp downstream
 SNP A/G G G G A
rs233494189
MGI SNP Detail		 Chr17:23894250 Rr339270 within coordinates of
Tssr142942 1275 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252685326
MGI SNP Detail		 Chr17:23894258 Rr339270 within coordinates of
Tssr142942 1283 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs215681165
MGI SNP Detail		 Chr17:23894368 Rr339270 within coordinates of
Tssr142942 1393 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108429252
MGI SNP Detail		 Chr17:23894389 Rr339270 within coordinates of
Tssr142942 1414 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G C C C C G G C G G G G C G G G G G C G G G G G C C G G G G G G G G G G G G
rs244368432
MGI SNP Detail		 Chr17:23894418 Rr339270 within coordinates of
Tssr142942 1443 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212200773
MGI SNP Detail		 Chr17:23894512 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1537 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236571020
MGI SNP Detail		 Chr17:23894571 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1596 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254652096
MGI SNP Detail		 Chr17:23894616 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1641 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224838595
MGI SNP Detail		 Chr17:23894690 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1715 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239850216
MGI SNP Detail		 Chr17:23894693 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1718 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586464575
MGI SNP Detail		 Chr17:23894778 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1803 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs579538066
MGI SNP Detail		 Chr17:23894786 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1811 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257810886
MGI SNP Detail		 Chr17:23894797 Rr339270 within coordinates of
Tnfrsf12a within coordinates of
Tssr142942 1822 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory