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Mouse SNP Summary
Symbol
Name
ID 		Tssr145169
transcription start site region 145169
MGI:6072936

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Showing SNP(s) 1 - 53 of 53

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SNP Density Heatmap
Chr17 from 52,138,035 bp to 52,142,045 bp
(4,011 bp)
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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246310919
MGI SNP Detail		 Chr17:52138046 Satb1 within coordinates of
Tssr145169 1989 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265494306
MGI SNP Detail		 Chr17:52138143 Satb1 within coordinates of
Tssr145169 1892 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230880394
MGI SNP Detail		 Chr17:52138193 Satb1 within coordinates of
Tssr145169 1842 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255279578
MGI SNP Detail		 Chr17:52138296 Satb1 within coordinates of
Tssr145169 1739 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs107620228
MGI SNP Detail		 Chr17:52138351 Satb1 within coordinates of
Tssr145169 1684 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A G A A A A A A A G A A A A
rs387614978
MGI SNP Detail		 Chr17:52138425 Satb1 within coordinates of
Tssr145169 1610 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223618208
MGI SNP Detail		 Chr17:52138426 Satb1 within coordinates of
Tssr145169 1609 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247603409
MGI SNP Detail		 Chr17:52138506 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1529 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs107737936
MGI SNP Detail		 Chr17:52138541 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1494 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs107672344
MGI SNP Detail		 Chr17:52138562 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1473 bp upstream
 SNP C/G G G G G G G G G G C G G G G G G G G G C G G C G G C G C G C G G G C G C G G G G C G G G C G G G C G G C G
rs108586545
MGI SNP Detail		 Chr17:52138565 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1470 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs107937201
MGI SNP Detail		 Chr17:52138732 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1303 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs387274708
MGI SNP Detail		 Chr17:52138887 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 1148 bp upstream
 SNP A/T T T T T T T T T T A T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs236566972
MGI SNP Detail		 Chr17:52139226 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 809 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261816340
MGI SNP Detail		 Chr17:52139229 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 806 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs33061990
MGI SNP Detail		 Chr17:52139342 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 693 bp upstream
 SNP C/T T C C C
rs229691419
MGI SNP Detail		 Chr17:52139360 Cpgi9312 within coordinates of
Satb1 within coordinates of
Tssr145169 675 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255028991
MGI SNP Detail		 Chr17:52139869 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Satb1 within coordinates of
Tssr145169 166 bp upstream
 SNP G/T G G G G G G G G G G G G G T G G T G G G T G G G G T G G G G G G G G
rs222480904
MGI SNP Detail		 Chr17:52140087 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Satb1 within coordinates of
Tssr145169 42 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs248740670
MGI SNP Detail		 Chr17:52140121 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Satb1 within coordinates of
Tssr145169 76 bp downstream
Tssr148684 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs263115876
MGI SNP Detail		 Chr17:52140296 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr370288 within coordinates of
Satb1 within coordinates of
Tssr145169 251 bp downstream
Tssr148687 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs387755306
MGI SNP Detail		 Chr17:52140360 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr370288 within coordinates of
Tssr145169 315 bp downstream
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs108578556
MGI SNP Detail		 Chr17:52140432 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Tssr145169 387 bp downstream
 SNP G G G
rs243126954
MGI SNP Detail		 Chr17:52140519 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Tssr145169 474 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs254635658
MGI SNP Detail		 Chr17:52140541 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Tssr145169 496 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223549526
MGI SNP Detail		 Chr17:52140578 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Tssr145169 533 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs247564234
MGI SNP Detail		 Chr17:52140818 Gm6934 within coordinates of
Tssr145169 773 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs108057650
MGI SNP Detail		 Chr17:52140820 Gm6934 within coordinates of
Tssr145169 775 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs108401178
MGI SNP Detail		 Chr17:52140829 Gm6934 within coordinates of
Tssr145169 784 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs257545125
MGI SNP Detail		 Chr17:52140840 Gm6934 within coordinates of
Tssr145169 795 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs108472171
MGI SNP Detail		 Chr17:52141296 Gm6934 within coordinates of
Tssr145169 1251 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49186572
MGI SNP Detail		 Chr17:52141345 Gm6934 within coordinates of
Tssr145169 1300 bp downstream
 SNP C/T C C C T
rs238532775
MGI SNP Detail		 Chr17:52141409 Gm6934 within coordinates of
Tssr145169 1364 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579604173
MGI SNP Detail		 Chr17:52141428 Gm6934 within coordinates of
Tssr145169 1383 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs108527362
MGI SNP Detail		 Chr17:52141463 Gm6934 within coordinates of
Tssr145169 1418 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G T G G G G G G G G G G G G
rs582998049
MGI SNP Detail		 Chr17:52141479 Gm6934 within coordinates of
Tssr145169 1434 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244597036
MGI SNP Detail		 Chr17:52141535 Gm6934 within coordinates of
Tssr145169 1490 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs46450719
MGI SNP Detail		 Chr17:52141567 Gm6934 within coordinates of
Tssr145169 1522 bp downstream
 SNP A/T T T A
rs212489319
MGI SNP Detail		 Chr17:52141574 Gm6934 within coordinates of
Tssr145169 1529 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229658609
MGI SNP Detail		 Chr17:52141622 Gm6934 within coordinates of
Tssr145169 1577 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254937806
MGI SNP Detail		 Chr17:52141638 Gm6934 within coordinates of
Tssr145169 1593 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222397474
MGI SNP Detail		 Chr17:52141658 Gm6934 within coordinates of
Tssr145169 1613 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238474017
MGI SNP Detail		 Chr17:52141686 Gm6934 within coordinates of
Tssr145169 1641 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262810632
MGI SNP Detail		 Chr17:52141713 Gm6934 within coordinates of
Tssr145169 1668 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587569108
MGI SNP Detail		 Chr17:52141719 Gm6934 within coordinates of
Tssr145169 1674 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs108847668
MGI SNP Detail		 Chr17:52141727 Gm6934 within coordinates of
Tssr145169 1682 bp downstream
 SNP A/C A A A C A A A A A A A A C A A A A A A A C A C A
rs52464505
MGI SNP Detail		 Chr17:52141740 Gm6934 within coordinates of
Tssr145169 1695 bp downstream
 SNP A/C C C C A
rs254598259
MGI SNP Detail		 Chr17:52141796 Tssr145169 1751 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217980077
MGI SNP Detail		 Chr17:52141797 Tssr145169 1752 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241592313
MGI SNP Detail		 Chr17:52141827 Tssr145169 1782 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47556616
MGI SNP Detail		 Chr17:52141832 Tssr145169 1787 bp downstream
 SNP C/T T T T C
rs387897536
MGI SNP Detail		 Chr17:52141944 Tssr145169 1899 bp downstream
 SNP G/T T T T T T T T T T G T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs107683642
MGI SNP Detail		 Chr17:52141988 Tssr145169 1943 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 53 of 53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory