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Mouse SNP Summary
Symbol
Name
ID 		Tssr145171
transcription start site region 145171
MGI:6072938

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255279578
MGI SNP Detail
Alliance Variant		 Chr17:52138296 Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1974 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs107620228
MGI SNP Detail
Alliance Variant		 Chr17:52138351 Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1919 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A G A A A A A A A G A A A A
rs387614978
MGI SNP Detail
Alliance Variant		 Chr17:52138425 Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1845 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223618208
MGI SNP Detail
Alliance Variant		 Chr17:52138426 Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1844 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247603409
MGI SNP Detail
Alliance Variant		 Chr17:52138506 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1764 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs107737936
MGI SNP Detail
Alliance Variant		 Chr17:52138541 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1729 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs107672344
MGI SNP Detail
Alliance Variant		 Chr17:52138562 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1708 bp upstream
 SNP C/G G G G G G G G G G C G G G G G G G G G C G G C G G C G C G C G G G C G C G G G G C G G G C G G G C G G C G
rs108586545
MGI SNP Detail
Alliance Variant		 Chr17:52138565 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1705 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs107937201
MGI SNP Detail
Alliance Variant		 Chr17:52138732 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1538 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs387274708
MGI SNP Detail
Alliance Variant		 Chr17:52138887 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Satb1 mRNA-UTR
Tssr145171 1383 bp upstream
 SNP A/T T T T T T T T T T A T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs236566972
MGI SNP Detail
Alliance Variant		 Chr17:52139226 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1044 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261816340
MGI SNP Detail
Alliance Variant		 Chr17:52139229 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 1041 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs33061990
MGI SNP Detail
Alliance Variant		 Chr17:52139342 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 928 bp upstream
 SNP C/T T C C C
rs229691419
MGI SNP Detail
Alliance Variant		 Chr17:52139360 Cpgi9312 within coordinates of
Rr528751 within coordinates of
Satb1 Intron
Tssr145171 910 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255028991
MGI SNP Detail
Alliance Variant		 Chr17:52139869 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528752 within coordinates of
Satb1 Intron
Satb1 mRNA-UTR
Tssr145171 401 bp upstream
 SNP G/T G G G G G G G G G G G G G T G G T G G G T G G G G T G G G G G G G G
rs222480904
MGI SNP Detail
Alliance Variant		 Chr17:52140087 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528752 within coordinates of
Satb1 Intron
Tssr145171 183 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs248740670
MGI SNP Detail
Alliance Variant		 Chr17:52140121 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528752 within coordinates of
Satb1 Intron
Tssr145171 149 bp upstream
Tssr148684 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs263115876
MGI SNP Detail
Alliance Variant		 Chr17:52140296 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr370288 within coordinates of
Satb1 mRNA-UTR
Tssr145171 7 bp downstream
Tssr148687 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs387755306
MGI SNP Detail		 Chr17:52140360 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr370288 within coordinates of
Rr528754 within coordinates of
Tssr145171 71 bp downstream
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs108578556
MGI SNP Detail		 Chr17:52140432 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528754 within coordinates of
Tssr145171 143 bp downstream
 SNP G G G
rs243126954
MGI SNP Detail		 Chr17:52140519 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528754 within coordinates of
Tssr145171 230 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs254635658
MGI SNP Detail		 Chr17:52140541 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528754 within coordinates of
Tssr145171 252 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs223549526
MGI SNP Detail		 Chr17:52140578 Cpgi9312 within coordinates of
Gm6934 within coordinates of
Rr528754 within coordinates of
Tssr145171 289 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs247564234
MGI SNP Detail		 Chr17:52140818 Gm6934 within coordinates of
Tssr145171 529 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs108057650
MGI SNP Detail		 Chr17:52140820 Gm6934 within coordinates of
Tssr145171 531 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108401178
MGI SNP Detail		 Chr17:52140829 Gm6934 within coordinates of
Tssr145171 540 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs257545125
MGI SNP Detail		 Chr17:52140840 Gm6934 within coordinates of
Tssr145171 551 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs108472171
MGI SNP Detail		 Chr17:52141296 Gm6934 within coordinates of
Tssr145171 1007 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49186572
MGI SNP Detail		 Chr17:52141345 Gm6934 within coordinates of
Tssr145171 1056 bp downstream
 SNP C/T C C C T
rs238532775
MGI SNP Detail		 Chr17:52141409 Gm6934 within coordinates of
Tssr145171 1120 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579604173
MGI SNP Detail		 Chr17:52141428 Gm6934 within coordinates of
Tssr145171 1139 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs108527362
MGI SNP Detail		 Chr17:52141463 Gm6934 within coordinates of
Tssr145171 1174 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G T G G G G G G G G G G G G
rs582998049
MGI SNP Detail		 Chr17:52141479 Gm6934 within coordinates of
Tssr145171 1190 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244597036
MGI SNP Detail		 Chr17:52141535 Gm6934 within coordinates of
Tssr145171 1246 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs46450719
MGI SNP Detail		 Chr17:52141567 Gm6934 within coordinates of
Tssr145171 1278 bp downstream
 SNP A/T T T A
rs212489319
MGI SNP Detail		 Chr17:52141574 Gm6934 within coordinates of
Tssr145171 1285 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229658609
MGI SNP Detail		 Chr17:52141622 Gm6934 within coordinates of
Tssr145171 1333 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254937806
MGI SNP Detail		 Chr17:52141638 Gm6934 within coordinates of
Tssr145171 1349 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222397474
MGI SNP Detail		 Chr17:52141658 Gm6934 within coordinates of
Tssr145171 1369 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238474017
MGI SNP Detail		 Chr17:52141686 Gm6934 within coordinates of
Tssr145171 1397 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262810632
MGI SNP Detail		 Chr17:52141713 Gm6934 within coordinates of
Tssr145171 1424 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587569108
MGI SNP Detail		 Chr17:52141719 Gm6934 within coordinates of
Tssr145171 1430 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs108847668
MGI SNP Detail		 Chr17:52141727 Gm6934 within coordinates of
Tssr145171 1438 bp downstream
 SNP A/C A A A C A A A A A A A A C A A A A A A A C A C A
rs52464505
MGI SNP Detail		 Chr17:52141740 Gm6934 within coordinates of
Tssr145171 1451 bp downstream
 SNP A/C C C C A
rs254598259
MGI SNP Detail		 Chr17:52141796 Tssr145171 1507 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217980077
MGI SNP Detail		 Chr17:52141797 Tssr145171 1508 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241592313
MGI SNP Detail		 Chr17:52141827 Tssr145171 1538 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs47556616
MGI SNP Detail		 Chr17:52141832 Tssr145171 1543 bp downstream
 SNP C/T T T T C
rs387897536
MGI SNP Detail		 Chr17:52141944 Tssr145171 1655 bp downstream
 SNP G/T T T T T T T T T T G T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs107683642
MGI SNP Detail		 Chr17:52141988 Tssr145171 1699 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233284990
MGI SNP Detail		 Chr17:52142156 Tssr145171 1867 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs108324851
MGI SNP Detail		 Chr17:52142182 Tssr145171 1893 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs265341449
MGI SNP Detail		 Chr17:52142197 Tssr145171 1908 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244575165
MGI SNP Detail		 Chr17:52142248 Tssr145171 1959 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 54 of 54
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory