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Mouse SNP Summary
Symbol
Name
ID
Tssr146808
transcription start site region 146808
MGI:6074575

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237146452
MGI SNP Detail
Chr17:25233038 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1702 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262105930
MGI SNP Detail
Chr17:25233124 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1616 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218855447
MGI SNP Detail
Chr17:25233221 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1519 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33386236
MGI SNP Detail
Chr17:25233226 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1514 bp downstream
SNP A/T T A T T T T T A A T T T T A
rs253255072
MGI SNP Detail
Chr17:25233255 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1485 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs221908629
MGI SNP Detail
Chr17:25233358 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1382 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs108795656
MGI SNP Detail
Chr17:25233416 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1324 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263099815
MGI SNP Detail
Chr17:25233478 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1262 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs230999994
MGI SNP Detail
Chr17:25233709 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1031 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs585559588
MGI SNP Detail
Chr17:25233724 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1016 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs3153876
MGI SNP Detail
Chr17:25233732 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 1008 bp downstream
SNP A/G G G G G A G G G G A A A A G
rs224063451
MGI SNP Detail
Chr17:25233778 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 962 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248424857
MGI SNP Detail
Chr17:25233873 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 867 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216395112
MGI SNP Detail
Chr17:25233881 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 859 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228821000
MGI SNP Detail
Chr17:25233918 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 822 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258756992
MGI SNP Detail
Chr17:25234016 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 724 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216212495
MGI SNP Detail
Chr17:25234044 Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 696 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs3155800
MGI SNP Detail
Chr17:25234127 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 613 bp downstream
SNP G/T T T T T T G T T T T T G T G G G T
rs257394808
MGI SNP Detail
Chr17:25234131 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 609 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213019194
MGI SNP Detail
Chr17:25234139 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 601 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230156911
MGI SNP Detail
Chr17:25234158 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 582 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253220485
MGI SNP Detail
Chr17:25234178 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 562 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222024712
MGI SNP Detail
Chr17:25234192 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 548 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246545558
MGI SNP Detail
Chr17:25234240 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 500 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262882074
MGI SNP Detail
Chr17:25234241 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 499 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223438351
MGI SNP Detail
Chr17:25234278 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 462 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245821024
MGI SNP Detail
Chr17:25234368 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 372 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256666286
MGI SNP Detail
Chr17:25234397 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 343 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223974152
MGI SNP Detail
Chr17:25234459 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146808 281 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs242569468
MGI SNP Detail
Chr17:25234665 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Rr339341 within coordinates of
Tssr146805 within coordinates of
Tssr146808 75 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33174228
MGI SNP Detail
Chr17:25234788 Cpgi8752 within coordinates of
Rr339341 within coordinates of
Rr405099 within coordinates of
Tssr146808 23 bp upstream
Tssr146809 within coordinates of
SNP C/G C G
rs232685290
MGI SNP Detail
Chr17:25234840 Cpgi8752 within coordinates of
Rr339341 within coordinates of
Rr405099 within coordinates of
Tssr146808 75 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251998441
MGI SNP Detail
Chr17:25234874 Cpgi8752 within coordinates of
Rr339341 within coordinates of
Rr405099 within coordinates of
Tssr146808 109 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3153877
MGI SNP Detail
Chr17:25234910 Cpgi8752 within coordinates of
Rr339341 within coordinates of
Rr405099 within coordinates of
Tssr146808 145 bp upstream
SNP C/G C G
rs231264335
MGI SNP Detail
Chr17:25235021 Cpgi8752 within coordinates of
Rr339341 within coordinates of
Rr405099 within coordinates of
Tssr146808 256 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3153880
MGI SNP Detail
Chr17:25235212 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 447 bp upstream
SNP A/T A A A T A A A T T T A
rs3153881
MGI SNP Detail
Chr17:25235330 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143120 within coordinates of
Tssr146808 565 bp upstream
SNP C/T C C C C C T C C C C C T T T T C
rs230124720
MGI SNP Detail
Chr17:25235369 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143120 within coordinates of
Tssr146808 604 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253322733
MGI SNP Detail
Chr17:25235389 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143120 within coordinates of
Tssr146808 624 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3155801
MGI SNP Detail
Chr17:25235446 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 681 bp upstream
SNP A/G G G A G G A
rs241158807
MGI SNP Detail
Chr17:25235459 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 694 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs258765449
MGI SNP Detail
Chr17:25235477 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 712 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs3153882
MGI SNP Detail
Chr17:25235487 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143121 within coordinates of
Tssr146808 722 bp upstream
SNP C/G G C C C G C
rs582274572
MGI SNP Detail
Chr17:25235499 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143121 within coordinates of
Tssr146808 734 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585771329
MGI SNP Detail
Chr17:25235516 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143121 within coordinates of
Tssr146808 751 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236199910
MGI SNP Detail
Chr17:25235555 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143122 within coordinates of
Tssr146808 790 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250270274
MGI SNP Detail
Chr17:25235558 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr143122 within coordinates of
Tssr146808 793 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218066380
MGI SNP Detail
Chr17:25235571 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 806 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs3153883
MGI SNP Detail
Chr17:25235611 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 846 bp upstream
SNP C/T T T T T T C T T T T C C C C T
rs260439986
MGI SNP Detail
Chr17:25235727 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 962 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224803626
MGI SNP Detail
Chr17:25235761 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 996 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247362403
MGI SNP Detail
Chr17:25235815 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1050 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3153884
MGI SNP Detail
Chr17:25235873 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1108 bp upstream
SNP A/C A C A A C
rs3153885
MGI SNP Detail
Chr17:25235914 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1149 bp upstream
SNP A/T T A T A
rs244198179
MGI SNP Detail
Chr17:25235933 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1168 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254993828
MGI SNP Detail
Chr17:25235974 Cpgi8752 within coordinates of
Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1209 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3153886
MGI SNP Detail
Chr17:25236035 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1270 bp upstream
SNP C/T C T C T
rs247744027
MGI SNP Detail
Chr17:25236104 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1339 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C T C
rs218324123
MGI SNP Detail
Chr17:25236206 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1441 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238846852
MGI SNP Detail
Chr17:25236247 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1482 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3153887
MGI SNP Detail
Chr17:25236306 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1541 bp upstream
SNP A/T T T A T A
rs214864183
MGI SNP Detail
Chr17:25236313 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1548 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33338778
MGI SNP Detail
Chr17:25236414 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1649 bp upstream
SNP C/T C T C C C C C C C C C C C C T
rs250392566
MGI SNP Detail
Chr17:25236639 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1874 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218165351
MGI SNP Detail
Chr17:25236670 Ift140 within coordinates of
Rr339341 within coordinates of
Tssr146808 1905 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 65 of 65

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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