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Mouse SNP Summary
Symbol
Name
ID 		Tssr146809
transcription start site region 146809
MGI:6074576

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Showing SNP(s) 1 - 65 of 65

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237146452
MGI SNP Detail		 Chr17:25233038 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1734 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262105930
MGI SNP Detail		 Chr17:25233124 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1648 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218855447
MGI SNP Detail		 Chr17:25233221 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1551 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33386236
MGI SNP Detail		 Chr17:25233226 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1546 bp downstream
 SNP A/T T A T T T T T A A T T T T A
rs253255072
MGI SNP Detail		 Chr17:25233255 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1517 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs221908629
MGI SNP Detail		 Chr17:25233358 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1414 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs108795656
MGI SNP Detail		 Chr17:25233416 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1356 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263099815
MGI SNP Detail		 Chr17:25233478 Cpgi8751 within coordinates of
Cramp1 within coordinates of
Tssr146809 1294 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs230999994
MGI SNP Detail		 Chr17:25233709 Cramp1 within coordinates of
Tssr146809 1063 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs585559588
MGI SNP Detail		 Chr17:25233724 Cramp1 within coordinates of
Tssr146809 1048 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs3153876
MGI SNP Detail		 Chr17:25233732 Cramp1 within coordinates of
Tssr146809 1040 bp downstream
 SNP A/G G G G G A G G G G A A A A G
rs224063451
MGI SNP Detail		 Chr17:25233778 Cramp1 within coordinates of
Tssr146809 994 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248424857
MGI SNP Detail		 Chr17:25233873 Cramp1 within coordinates of
Tssr146809 899 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216395112
MGI SNP Detail		 Chr17:25233881 Cramp1 within coordinates of
Tssr146809 891 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228821000
MGI SNP Detail		 Chr17:25233918 Cramp1 within coordinates of
Tssr146809 854 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258756992
MGI SNP Detail		 Chr17:25234016 Cramp1 within coordinates of
Tssr146809 756 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216212495
MGI SNP Detail		 Chr17:25234044 Cramp1 within coordinates of
Tssr146809 728 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs3155800
MGI SNP Detail		 Chr17:25234127 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 645 bp downstream
 SNP G/T T T T T T G T T T T T G T G G G T
rs257394808
MGI SNP Detail		 Chr17:25234131 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 641 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213019194
MGI SNP Detail		 Chr17:25234139 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 633 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230156911
MGI SNP Detail		 Chr17:25234158 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 614 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253220485
MGI SNP Detail		 Chr17:25234178 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 594 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222024712
MGI SNP Detail		 Chr17:25234192 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 580 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246545558
MGI SNP Detail		 Chr17:25234240 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 532 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262882074
MGI SNP Detail		 Chr17:25234241 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 531 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223438351
MGI SNP Detail		 Chr17:25234278 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 494 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245821024
MGI SNP Detail		 Chr17:25234368 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 404 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256666286
MGI SNP Detail		 Chr17:25234397 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 375 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223974152
MGI SNP Detail		 Chr17:25234459 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146809 313 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs242569468
MGI SNP Detail		 Chr17:25234665 Cpgi8752 within coordinates of
Cramp1 within coordinates of
Tssr146805 within coordinates of
Tssr146809 107 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33174228
MGI SNP Detail		 Chr17:25234788 Cpgi8752 within coordinates of
Rr405099 within coordinates of
Tssr146809 within coordinates of
 SNP C/G C G
rs232685290
MGI SNP Detail		 Chr17:25234840 Cpgi8752 within coordinates of
Rr405099 within coordinates of
Tssr146809 45 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251998441
MGI SNP Detail		 Chr17:25234874 Cpgi8752 within coordinates of
Rr405099 within coordinates of
Tssr146809 79 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3153877
MGI SNP Detail		 Chr17:25234910 Cpgi8752 within coordinates of
Rr405099 within coordinates of
Tssr146809 115 bp upstream
 SNP C/G C G
rs231264335
MGI SNP Detail		 Chr17:25235021 Cpgi8752 within coordinates of
Rr405099 within coordinates of
Tssr146809 226 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3153880
MGI SNP Detail		 Chr17:25235212 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 417 bp upstream
 SNP A/T A A A T A A A T T T A
rs3153881
MGI SNP Detail		 Chr17:25235330 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143120 within coordinates of
Tssr146809 535 bp upstream
 SNP C/T C C C C C T C C C C C T T T T C
rs230124720
MGI SNP Detail		 Chr17:25235369 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143120 within coordinates of
Tssr146809 574 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253322733
MGI SNP Detail		 Chr17:25235389 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143120 within coordinates of
Tssr146809 594 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3155801
MGI SNP Detail		 Chr17:25235446 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 651 bp upstream
 SNP A/G G G A G G A
rs241158807
MGI SNP Detail		 Chr17:25235459 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 664 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs258765449
MGI SNP Detail		 Chr17:25235477 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 682 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs3153882
MGI SNP Detail		 Chr17:25235487 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143121 within coordinates of
Tssr146809 692 bp upstream
 SNP C/G G C C C G C
rs582274572
MGI SNP Detail		 Chr17:25235499 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143121 within coordinates of
Tssr146809 704 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585771329
MGI SNP Detail		 Chr17:25235516 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143121 within coordinates of
Tssr146809 721 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236199910
MGI SNP Detail		 Chr17:25235555 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143122 within coordinates of
Tssr146809 760 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250270274
MGI SNP Detail		 Chr17:25235558 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr143122 within coordinates of
Tssr146809 763 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218066380
MGI SNP Detail		 Chr17:25235571 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 776 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs3153883
MGI SNP Detail		 Chr17:25235611 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 816 bp upstream
 SNP C/T T T T T T C T T T T C C C C T
rs260439986
MGI SNP Detail		 Chr17:25235727 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 932 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224803626
MGI SNP Detail		 Chr17:25235761 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 966 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247362403
MGI SNP Detail		 Chr17:25235815 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 1020 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3153884
MGI SNP Detail		 Chr17:25235873 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 1078 bp upstream
 SNP A/C A C A A C
rs3153885
MGI SNP Detail		 Chr17:25235914 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 1119 bp upstream
 SNP A/T T A T A
rs244198179
MGI SNP Detail		 Chr17:25235933 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 1138 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254993828
MGI SNP Detail		 Chr17:25235974 Cpgi8752 within coordinates of
Ift140 within coordinates of
Tssr146809 1179 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3153886
MGI SNP Detail		 Chr17:25236035 Ift140 within coordinates of
Tssr146809 1240 bp upstream
 SNP C/T C T C T
rs247744027
MGI SNP Detail		 Chr17:25236104 Ift140 within coordinates of
Tssr146809 1309 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C T C
rs218324123
MGI SNP Detail		 Chr17:25236206 Ift140 within coordinates of
Tssr146809 1411 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238846852
MGI SNP Detail		 Chr17:25236247 Ift140 within coordinates of
Tssr146809 1452 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3153887
MGI SNP Detail		 Chr17:25236306 Ift140 within coordinates of
Tssr146809 1511 bp upstream
 SNP A/T T T A T A
rs214864183
MGI SNP Detail		 Chr17:25236313 Ift140 within coordinates of
Tssr146809 1518 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33338778
MGI SNP Detail		 Chr17:25236414 Ift140 within coordinates of
Tssr146809 1619 bp upstream
 SNP C/T C T C C C C C C C C C C C C T
rs250392566
MGI SNP Detail		 Chr17:25236639 Ift140 within coordinates of
Tssr146809 1844 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218165351
MGI SNP Detail		 Chr17:25236670 Ift140 within coordinates of
Tssr146809 1875 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 65 of 65
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory