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Mouse SNP Summary
Symbol
Name
ID 		Tssr149773
transcription start site region 149773
MGI:6077540

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216816963
MGI SNP Detail		 Chr17:87752283 Calm2 within coordinates of
Tssr149773 1999 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs107956608
MGI SNP Detail		 Chr17:87752287 Calm2 within coordinates of
Tssr149773 1995 bp downstream
 SNP C/T C C C T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T T T T T T T T T C T T C T
rs578358074
MGI SNP Detail		 Chr17:87752367 Calm2 within coordinates of
Tssr149773 1915 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs107850017
MGI SNP Detail		 Chr17:87752514 Calm2 within coordinates of
Tssr149773 1768 bp downstream
 SNP A/G G G A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A A A A G A A G A
rs215257582
MGI SNP Detail		 Chr17:87752600 Calm2 within coordinates of
Tssr149773 1682 bp downstream
 SNP G/T T T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236153669
MGI SNP Detail		 Chr17:87752769 Calm2 within coordinates of
Tssr149773 1513 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs107642599
MGI SNP Detail		 Chr17:87752806 Calm2 within coordinates of
Tssr149773 1476 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs220441285
MGI SNP Detail		 Chr17:87752834 Calm2 within coordinates of
Tssr149773 1448 bp downstream
 SNP C/T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T
rs242635438
MGI SNP Detail		 Chr17:87752846 Calm2 within coordinates of
Tssr149773 1436 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108553771
MGI SNP Detail		 Chr17:87753028 Calm2 within coordinates of
Tssr149773 1254 bp downstream
 SNP A/G G G G A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A A A A G A A G A
rs221558691
MGI SNP Detail		 Chr17:87753139 Calm2 within coordinates of
Rr393074 within coordinates of
Tssr149773 1143 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240320352
MGI SNP Detail		 Chr17:87753142 Calm2 within coordinates of
Rr393074 within coordinates of
Tssr149773 1140 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262596807
MGI SNP Detail		 Chr17:87753301 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Tssr149773 981 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229815999
MGI SNP Detail		 Chr17:87753349 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Tssr149773 933 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs108501860
MGI SNP Detail		 Chr17:87753506 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Tssr149773 776 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs108174425
MGI SNP Detail		 Chr17:87753643 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Rr532695 within coordinates of
Tssr149773 639 bp downstream
 SNP C/G C G G G G G G G G G G G G C G C C G G G C G G G G G G G G G G G G G G C G G C G
rs582863525
MGI SNP Detail		 Chr17:87753683 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Rr532695 within coordinates of
Tssr149773 599 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs586363836
MGI SNP Detail		 Chr17:87753690 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Rr532695 within coordinates of
Tssr149773 592 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs223899181
MGI SNP Detail		 Chr17:87753729 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Rr532695 within coordinates of
Tssr149773 553 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs247690664
MGI SNP Detail		 Chr17:87753895 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr393074 within coordinates of
Rr532695 within coordinates of
Tssr149773 387 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs579976443
MGI SNP Detail		 Chr17:87753981 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr532695 within coordinates of
Tssr149773 301 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216939681
MGI SNP Detail		 Chr17:87753986 Calm2 within coordinates of
Cpgi9626 within coordinates of
Rr532695 within coordinates of
Tssr149773 296 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227702286
MGI SNP Detail		 Chr17:87754112 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532696 within coordinates of
Tssr149773 170 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245435952
MGI SNP Detail		 Chr17:87754118 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532696 within coordinates of
Tssr149773 164 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214797785
MGI SNP Detail		 Chr17:87754119 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532696 within coordinates of
Tssr149773 163 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238163291
MGI SNP Detail		 Chr17:87754163 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370330 within coordinates of
Rr532696 within coordinates of
Tssr149773 119 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs256391958
MGI SNP Detail		 Chr17:87754181 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370330 within coordinates of
Rr532696 within coordinates of
Tssr149773 101 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs387158145
MGI SNP Detail		 Chr17:87754363 Calm2 within coordinates of
Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 66 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C T C C C C C C C C
rs108618692
MGI SNP Detail		 Chr17:87754450 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 153 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387490674
MGI SNP Detail		 Chr17:87754466 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 169 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C
rs108159515
MGI SNP Detail		 Chr17:87754527 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370331 within coordinates of
Rr532697 within coordinates of
Tssr149773 230 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs254215080
MGI SNP Detail		 Chr17:87754600 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370331 within coordinates of
Rr532697 within coordinates of
Tssr149773 303 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108545992
MGI SNP Detail		 Chr17:87754604 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370331 within coordinates of
Rr532697 within coordinates of
Tssr149773 307 bp upstream
 SNP C/T C C T C C T T C C T T C C C C C T C C T C T C C C C T C T C C T C C C C C C T T T C C T C C C C C C T
rs108062418
MGI SNP Detail		 Chr17:87754608 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370331 within coordinates of
Rr532697 within coordinates of
Tssr149773 311 bp upstream
 SNP A/G G G A G G A A G G A A G G G G G A G G A G G G G G G G G A G G G G G G G G G G A A A G G A G G G G G G A
rs262326102
MGI SNP Detail		 Chr17:87754629 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr370331 within coordinates of
Rr532697 within coordinates of
Tssr149773 332 bp upstream
 SNP A/G A A G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs222390949
MGI SNP Detail		 Chr17:87754674 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 377 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50421721
MGI SNP Detail		 Chr17:87754741 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 444 bp upstream
 SNP A/C A C
rs261273645
MGI SNP Detail		 Chr17:87754851 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Rr532697 within coordinates of
Tssr149773 554 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs52386331
MGI SNP Detail		 Chr17:87754936 Cpgi9626 within coordinates of
Gm65472 within coordinates of
Tssr149773 639 bp upstream
 SNP A/G A A G
rs241925918
MGI SNP Detail		 Chr17:87754965 Gm65472 within coordinates of
Tssr149773 668 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G G G G G G G G G A G G G G
rs387865243
MGI SNP Detail		 Chr17:87754988 Gm65472 within coordinates of
Tssr149773 691 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259289197
MGI SNP Detail		 Chr17:87755084 Gm65472 within coordinates of
Tssr149773 787 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108661049
MGI SNP Detail		 Chr17:87755097 Gm65472 within coordinates of
Tssr149773 800 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs108174321
MGI SNP Detail		 Chr17:87755133 Gm65472 within coordinates of
Tssr149773 836 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265331102
MGI SNP Detail		 Chr17:87755134 Gm65472 within coordinates of
Tssr149773 837 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387083928
MGI SNP Detail		 Chr17:87755393 Gm65472 within coordinates of
Tssr149773 1096 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G A G G G G G G G G
rs108556465
MGI SNP Detail		 Chr17:87755397 Gm65472 within coordinates of
Tssr149773 1100 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs108540435
MGI SNP Detail		 Chr17:87755419 Gm65472 within coordinates of
Tssr149773 1122 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs107758200
MGI SNP Detail		 Chr17:87755445 Gm65472 within coordinates of
Tssr149773 1148 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs33369990
MGI SNP Detail		 Chr17:87755491 Gm65472 within coordinates of
Tssr149773 1194 bp upstream
 SNP C/T T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247989930
MGI SNP Detail		 Chr17:87755599 Gm65472 within coordinates of
Tssr149773 1302 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs215746332
MGI SNP Detail		 Chr17:87755635 Gm65472 within coordinates of
Tssr149773 1338 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33689393
MGI SNP Detail		 Chr17:87755643 Gm65472 within coordinates of
Tssr149773 1346 bp upstream
 SNP A/T A A T A A A
rs586735283
MGI SNP Detail		 Chr17:87755646 Gm65472 within coordinates of
Tssr149773 1349 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257775892
MGI SNP Detail		 Chr17:87755696 Tssr149773 1399 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs107930370
MGI SNP Detail		 Chr17:87755844 Tssr149773 1547 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580589076
MGI SNP Detail		 Chr17:87755944 Tssr149773 1647 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C C C C C C C C C A C C C C
rs235291878
MGI SNP Detail		 Chr17:87756088 Tssr149773 1791 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs260596926
MGI SNP Detail		 Chr17:87756110 Tssr149773 1813 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs108822819
MGI SNP Detail		 Chr17:87756169 Tssr149773 1872 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs108185602
MGI SNP Detail		 Chr17:87756177 Tssr149773 1880 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33558162
MGI SNP Detail		 Chr17:87756212 Tssr149773 1915 bp upstream
 SNP G/T T T G G
rs108838535
MGI SNP Detail		 Chr17:87756231 Tssr149773 1934 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs108617937
MGI SNP Detail		 Chr17:87756237 Tssr149773 1940 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 64 of 64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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