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Mouse SNP Summary
Symbol
Name
ID
Tssr149874
transcription start site region 149874
MGI:6077641

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235708569
MGI SNP Detail
Chr17:91398475 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1971 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs387153433
MGI SNP Detail
Chr17:91398482 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1964 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T C T T T T T T T C T T
rs52219488
MGI SNP Detail
Chr17:91398494 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1952 bp downstream
SNP A/T A T A
rs46964470
MGI SNP Detail
Chr17:91398531 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1915 bp downstream
SNP A/C C A C
rs240499366
MGI SNP Detail
Chr17:91398542 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1904 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs387512302
MGI SNP Detail
Chr17:91398609 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1837 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A G A A A A A A A G A A
rs263365710
MGI SNP Detail
Chr17:91398616 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1830 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs51951942
MGI SNP Detail
Chr17:91398684 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1762 bp downstream
SNP A/G G A
rs246766587
MGI SNP Detail
Chr17:91398706 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1740 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs52173570
MGI SNP Detail
Chr17:91398711 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1735 bp downstream
SNP A/G A G A
rs387671188
MGI SNP Detail
Chr17:91398793 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1653 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C T C C
rs586866489
MGI SNP Detail
Chr17:91398801 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1645 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580815100
MGI SNP Detail
Chr17:91398815 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1631 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584564534
MGI SNP Detail
Chr17:91398873 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1573 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224048682
MGI SNP Detail
Chr17:91398935 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1511 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs107762086
MGI SNP Detail
Chr17:91399054 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1392 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T G T T
rs387050636
MGI SNP Detail
Chr17:91399057 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1389 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G
rs107617296
MGI SNP Detail
Chr17:91399121 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 1325 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A T A A A A A T A A
rs387396610
MGI SNP Detail
Chr17:91399788 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 658 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G T G G G G G G G T G G
rs259485137
MGI SNP Detail
Chr17:91399807 Nrxn1 within coordinates of
Rr340336 within coordinates of
Tssr149874 639 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs226576778
MGI SNP Detail
Chr17:91400256 Cpgi9653 within coordinates of
Nrxn1 within coordinates of
Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149871 within coordinates of
Tssr149874 190 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253512429
MGI SNP Detail
Chr17:91400417 Nrxn1 within coordinates of
Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149873 within coordinates of
Tssr149874 29 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214678728
MGI SNP Detail
Chr17:91400439 Nrxn1 within coordinates of
Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 7 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs231145956
MGI SNP Detail
Chr17:91400456 Nrxn1 within coordinates of
Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108309116
MGI SNP Detail
Chr17:91400463 Nrxn1 within coordinates of
Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 6 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A G A G A A A A A G A A A A A A G A G A A A A A G A G A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213122337
MGI SNP Detail
Chr17:91400500 Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 43 bp upstream
Tssr149875 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs387731880
MGI SNP Detail
Chr17:91400511 Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 54 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A C A A A A A A A C A
rs263611238
MGI SNP Detail
Chr17:91400591 Rr334029 within coordinates of
Rr340336 within coordinates of
Tssr149874 134 bp upstream
SNP A A A
rs235646148
MGI SNP Detail
Chr17:91400640 Rr340336 within coordinates of
Tssr149874 183 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs255475353
MGI SNP Detail
Chr17:91400707 Rr340336 within coordinates of
Tssr149874 250 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215250211
MGI SNP Detail
Chr17:91400863 Rr340336 within coordinates of
Tssr149874 406 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs108490848
MGI SNP Detail
Chr17:91400995 Rr340336 within coordinates of
Tssr149874 538 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259420122
MGI SNP Detail
Chr17:91401000 Rr340336 within coordinates of
Tssr149874 543 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49428756
MGI SNP Detail
Chr17:91401028 Rr340336 within coordinates of
Tssr149874 571 bp upstream
SNP A/G G G G G G G A G A G
rs108873757
MGI SNP Detail
Chr17:91401056 Rr340336 within coordinates of
Tssr149874 599 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260753447
MGI SNP Detail
Chr17:91401108 Rr340336 within coordinates of
Tssr149874 651 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218552405
MGI SNP Detail
Chr17:91401114 Rr340336 within coordinates of
Tssr149874 657 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50344542
MGI SNP Detail
Chr17:91401146 Rr340336 within coordinates of
Tssr149874 689 bp upstream
SNP A/G G G G A G G G
rs33609675
MGI SNP Detail
Chr17:91401215 Rr340336 within coordinates of
Tssr149874 758 bp upstream
SNP A/G G G G A A A A A A G
rs220442678
MGI SNP Detail
Chr17:91401238 Rr340336 within coordinates of
Tssr149874 781 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs108891992
MGI SNP Detail
Chr17:91401284 Rr340336 within coordinates of
Tssr149874 827 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262214350
MGI SNP Detail
Chr17:91401359 Rr340336 within coordinates of
Tssr149874 902 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231573175
MGI SNP Detail
Chr17:91401392 Rr340336 within coordinates of
Tssr149874 935 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs249473802
MGI SNP Detail
Chr17:91401420 Rr340336 within coordinates of
Tssr149874 963 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47095382
MGI SNP Detail
Chr17:91401422 Rr340336 within coordinates of
Tssr149874 965 bp upstream
SNP A/C C C A C
rs108781636
MGI SNP Detail
Chr17:91401459 Rr340336 within coordinates of
Tssr149874 1002 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A G A G A A A A A G A A A A A A G A G A A A A A G A G A A
rs108101623
MGI SNP Detail
Chr17:91401477 Rr340336 within coordinates of
Tssr149874 1020 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs108933837
MGI SNP Detail
Chr17:91401498 Rr340336 within coordinates of
Tssr149874 1041 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs108072932
MGI SNP Detail
Chr17:91401564 Rr340336 within coordinates of
Tssr149874 1107 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T C T C T T T T T C T T T T T T C T C T T T T T C T C T T
rs108214683
MGI SNP Detail
Chr17:91401567 Rr340336 within coordinates of
Tssr149874 1110 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214857195
MGI SNP Detail
Chr17:91401573 Rr340336 within coordinates of
Tssr149874 1116 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238949641
MGI SNP Detail
Chr17:91401617 Tssr149874 1160 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255510964
MGI SNP Detail
Chr17:91401699 Tssr149874 1242 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs584715655
MGI SNP Detail
Chr17:91401703 Tssr149874 1246 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218541559
MGI SNP Detail
Chr17:91401735 Tssr149874 1278 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108341331
MGI SNP Detail
Chr17:91401923 Tssr149874 1466 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T C T C T T T T T C T T T T T T C T C T T T T T C T C T T
rs579281751
MGI SNP Detail
Chr17:91401972 Tssr149874 1515 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs252995256
MGI SNP Detail
Chr17:91402075 Tssr149874 1618 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T C T C T T T T T C T C T T
rs49876052
MGI SNP Detail
Chr17:91402131 Tssr149874 1674 bp upstream
SNP A/G A A A A A A A A G A
rs582945533
MGI SNP Detail
Chr17:91402165 Tssr149874 1708 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs51877404
MGI SNP Detail
Chr17:91402184 Tssr149874 1727 bp upstream
SNP A/G G G G G G G A G A G
rs585445688
MGI SNP Detail
Chr17:91402199 Tssr149874 1742 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs578298923
MGI SNP Detail
Chr17:91402208 Tssr149874 1751 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs387020020
MGI SNP Detail
Chr17:91402244 Tssr149874 1787 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A G A A A A A A A G A A
rs585597150
MGI SNP Detail
Chr17:91402266 Tssr149874 1809 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs246112808
MGI SNP Detail
Chr17:91402317 Tssr149874 1860 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs264973647
MGI SNP Detail
Chr17:91402365 Tssr149874 1908 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579828411
MGI SNP Detail
Chr17:91402379 Tssr149874 1922 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs108402700
MGI SNP Detail
Chr17:91402385 Tssr149874 1928 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244481934
MGI SNP Detail
Chr17:91402388 Tssr149874 1931 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47491143
MGI SNP Detail
Chr17:91402389 Tssr149874 1932 bp upstream
SNP A/G G G G G G G G G G A G
rs228740861
MGI SNP Detail
Chr17:91402391 Tssr149874 1934 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249037094
MGI SNP Detail
Chr17:91402438 Tssr149874 1981 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51033919
MGI SNP Detail
Chr17:91402439 Tssr149874 1982 bp upstream
SNP A/G G G G G G G G G G A G
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Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory