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Mouse SNP Summary
Symbol
Name
ID 		Tssr149959
transcription start site region 149959
MGI:6077726

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264958591
MGI SNP Detail		 Chr18:6134467 Arhgap12 within coordinates of
Tssr149959 1953 bp upstream
 SNP A/G G A
rs230394529
MGI SNP Detail		 Chr18:6134504 Arhgap12 within coordinates of
Tssr149959 1916 bp upstream
 SNP G/T T G
rs257306754
MGI SNP Detail		 Chr18:6134525 Arhgap12 within coordinates of
Tssr149959 1895 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256618169
MGI SNP Detail		 Chr18:6134572 Arhgap12 within coordinates of
Tssr149959 1848 bp upstream
 SNP G/T G T
rs581675014
MGI SNP Detail		 Chr18:6134624 Arhgap12 within coordinates of
Tssr149959 1796 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs242290482
MGI SNP Detail		 Chr18:6134711 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1709 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs250752088
MGI SNP Detail		 Chr18:6134857 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1563 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs212340618
MGI SNP Detail		 Chr18:6134858 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1562 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233382287
MGI SNP Detail		 Chr18:6134875 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1545 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251569804
MGI SNP Detail		 Chr18:6134976 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1444 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs222184016
MGI SNP Detail		 Chr18:6135001 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1419 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30076833
MGI SNP Detail		 Chr18:6135012 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1408 bp upstream
 SNP A/G A G G G G G A
rs262697297
MGI SNP Detail		 Chr18:6135152 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1268 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29622903
MGI SNP Detail		 Chr18:6135167 Arhgap12 within coordinates of
Rr533476 within coordinates of
Tssr149959 1253 bp upstream
 SNP G/T T G G G T
rs247043506
MGI SNP Detail		 Chr18:6135307 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 1113 bp upstream
 SNP C/T T C
rs254557179
MGI SNP Detail		 Chr18:6135459 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 961 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223378937
MGI SNP Detail		 Chr18:6135485 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 935 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs238223394
MGI SNP Detail		 Chr18:6135500 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 920 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs255379734
MGI SNP Detail		 Chr18:6135509 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 911 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs216406727
MGI SNP Detail		 Chr18:6135588 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533476 within coordinates of
Tssr149959 832 bp upstream
 SNP A/G G A
rs252372012
MGI SNP Detail		 Chr18:6135896 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr533477 within coordinates of
Tssr149959 524 bp upstream
Tssr152340 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs266153240
MGI SNP Detail		 Chr18:6136097 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 323 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A A G A A A A A A A G A A A
rs233321452
MGI SNP Detail		 Chr18:6136098 Arhgap12 within coordinates of
Cpgi9676 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 322 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T A T T T T T T T A T T T T
rs107655045
MGI SNP Detail		 Chr18:6136108 Cpgi9676 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 312 bp upstream
 SNP A/G G G G G A
rs212198209
MGI SNP Detail		 Chr18:6136138 Cpgi9676 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 282 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29558153
MGI SNP Detail		 Chr18:6136161 Cpgi9676 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 259 bp upstream
 SNP C/G G C C C C C G
rs245234654
MGI SNP Detail		 Chr18:6136221 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr405549 within coordinates of
Rr533477 within coordinates of
Tssr149959 199 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G
rs30113074
MGI SNP Detail		 Chr18:6136231 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr405549 within coordinates of
Rr533478 within coordinates of
Tssr149959 189 bp upstream
 SNP C/T T C C C C C T
rs240422121
MGI SNP Detail		 Chr18:6136233 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr405549 within coordinates of
Rr533478 within coordinates of
Tssr149959 187 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258354312
MGI SNP Detail		 Chr18:6136264 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 156 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226769538
MGI SNP Detail		 Chr18:6136293 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 127 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234120898
MGI SNP Detail		 Chr18:6136332 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 88 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248705217
MGI SNP Detail		 Chr18:6136421 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs217730979
MGI SNP Detail		 Chr18:6136444 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 17 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs238272533
MGI SNP Detail		 Chr18:6136479 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 52 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G C G G G G
rs584828639
MGI SNP Detail		 Chr18:6136480 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 53 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs255220350
MGI SNP Detail		 Chr18:6136484 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 57 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C G C C C C
rs224976981
MGI SNP Detail		 Chr18:6136485 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 58 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs247765897
MGI SNP Detail		 Chr18:6136564 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 137 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs264481854
MGI SNP Detail		 Chr18:6136614 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 187 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234175959
MGI SNP Detail		 Chr18:6136629 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 202 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs244305280
MGI SNP Detail		 Chr18:6136633 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 206 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T G T T T T T T G T T T T T T T G T T T T
rs256210032
MGI SNP Detail		 Chr18:6136642 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 215 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226693700
MGI SNP Detail		 Chr18:6136656 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 229 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29768228
MGI SNP Detail		 Chr18:6136722 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 295 bp downstream
 SNP A/C A C C C C A
rs217466423
MGI SNP Detail		 Chr18:6136786 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 359 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238299491
MGI SNP Detail		 Chr18:6136793 Cpgi9676 within coordinates of
Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 366 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs260541126
MGI SNP Detail		 Chr18:6136819 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 392 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218521094
MGI SNP Detail		 Chr18:6136820 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 393 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233999723
MGI SNP Detail		 Chr18:6136829 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 402 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248591472
MGI SNP Detail		 Chr18:6136854 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 427 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217794614
MGI SNP Detail		 Chr18:6137018 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 591 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231909332
MGI SNP Detail		 Chr18:6137084 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 657 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs257004944
MGI SNP Detail		 Chr18:6137122 Gm58680 within coordinates of
Rr533478 within coordinates of
Tssr149959 695 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29622199
MGI SNP Detail		 Chr18:6137182 Gm58680 within coordinates of
Tssr149959 755 bp downstream
 SNP C/T C T T T T
rs245000402
MGI SNP Detail		 Chr18:6137219 Gm58680 within coordinates of
Tssr149959 792 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30077618
MGI SNP Detail		 Chr18:6137227 Gm58680 within coordinates of
Tssr149959 800 bp downstream
 SNP C/T C T T T T
rs225704071
MGI SNP Detail		 Chr18:6137260 Gm58680 within coordinates of
Tssr149959 833 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238154263
MGI SNP Detail		 Chr18:6137358 Gm58680 within coordinates of
Rr533479 within coordinates of
Tssr149959 931 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256087640
MGI SNP Detail		 Chr18:6137751 Rr533479 within coordinates of
Tssr149959 1324 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262394204
MGI SNP Detail		 Chr18:6137966 Rr533479 within coordinates of
Tssr149959 1539 bp downstream
 SNP A/G A G
rs239074385
MGI SNP Detail		 Chr18:6138062 Rr533479 within coordinates of
Tssr149959 1635 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263792135
MGI SNP Detail		 Chr18:6138133 Tssr149959 1706 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232462713
MGI SNP Detail		 Chr18:6138182 Tssr149959 1755 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254927516
MGI SNP Detail		 Chr18:6138218 Tssr149959 1791 bp downstream
 SNP A/G A A A G A G A A G G A A G G G G G G G G A G G G G G A G G G G A G G G G G G G G G G G A G A G A G G G G A
rs215036359
MGI SNP Detail		 Chr18:6138271 Tssr149959 1844 bp downstream
 SNP G/T G T
rs233761112
MGI SNP Detail		 Chr18:6138306 Tssr149959 1879 bp downstream
 SNP A/C C A
rs108128836
MGI SNP Detail		 Chr18:6138389 Tssr149959 1962 bp downstream
 SNP C/T C C T
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Showing SNP(s) 1 - 68 of 68
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory