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Mouse SNP Summary
Symbol
Name
ID 		Tssr150460
transcription start site region 150460
MGI:6078227

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250993352
MGI SNP Detail		 Chr18:34539578 Tssr150460 1981 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31611646
MGI SNP Detail		 Chr18:34539640 Tssr150460 1919 bp upstream
 SNP A/G A A A A A G A A A G A A G A
rs235052787
MGI SNP Detail		 Chr18:34539663 Tssr150460 1896 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250064883
MGI SNP Detail		 Chr18:34539707 Tssr150460 1852 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs216420474
MGI SNP Detail		 Chr18:34539727 Tssr150460 1832 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs236134049
MGI SNP Detail		 Chr18:34539777 Tssr150460 1782 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252617156
MGI SNP Detail		 Chr18:34539786 Tssr150460 1773 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
rs224775498
MGI SNP Detail		 Chr18:34539929 Tssr150460 1630 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586912338
MGI SNP Detail		 Chr18:34540016 Tssr150460 1543 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245785495
MGI SNP Detail		 Chr18:34540028 Tssr150460 1531 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257745717
MGI SNP Detail		 Chr18:34540075 Tssr150460 1484 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220021463
MGI SNP Detail		 Chr18:34540260 Tssr150460 1299 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C A C C C C C C C C C C A C
rs236712153
MGI SNP Detail		 Chr18:34540321 Tssr150460 1238 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254689519
MGI SNP Detail		 Chr18:34540353 Tssr150460 1206 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228563902
MGI SNP Detail		 Chr18:34540419 Tssr150460 1140 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs241713233
MGI SNP Detail		 Chr18:34540495 Tssr150460 1064 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257385292
MGI SNP Detail		 Chr18:34540520 Tssr150460 1039 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
rs232566948
MGI SNP Detail		 Chr18:34540603 Tssr150460 956 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255549968
MGI SNP Detail		 Chr18:34540655 Tssr150460 904 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215083871
MGI SNP Detail		 Chr18:34540750 Tssr150460 809 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31611645
MGI SNP Detail		 Chr18:34540945 Tssr150460 614 bp upstream
 SNP A/G A A A A A A A A A A A A A G
rs244642942
MGI SNP Detail		 Chr18:34540972 Tssr150460 587 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216372114
MGI SNP Detail		 Chr18:34541093 Tssr150460 466 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs236040913
MGI SNP Detail		 Chr18:34541106 Tssr150460 453 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31611644
MGI SNP Detail		 Chr18:34541171 Tssr150460 388 bp upstream
 SNP A/G A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252527574
MGI SNP Detail		 Chr18:34541208 Tssr150460 351 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216848455
MGI SNP Detail		 Chr18:34541325 Tssr150460 234 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581560987
MGI SNP Detail		 Chr18:34541564 Pkd2l2 within coordinates of
Tssr150460 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs235974450
MGI SNP Detail		 Chr18:34541646 Pkd2l2 within coordinates of
Tssr150460 82 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262379471
MGI SNP Detail		 Chr18:34541727 Pkd2l2 within coordinates of
Tssr150460 163 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220306819
MGI SNP Detail		 Chr18:34541739 Pkd2l2 within coordinates of
Tssr150460 175 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236642369
MGI SNP Detail		 Chr18:34541805 Pkd2l2 within coordinates of
Tssr150460 241 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252632904
MGI SNP Detail		 Chr18:34541838 Pkd2l2 within coordinates of
Tssr150460 274 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222676024
MGI SNP Detail		 Chr18:34541875 Pkd2l2 within coordinates of
Tssr150460 311 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584864190
MGI SNP Detail		 Chr18:34541887 Pkd2l2 within coordinates of
Tssr150460 323 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs241601926
MGI SNP Detail		 Chr18:34541977 Pkd2l2 within coordinates of
Tssr150460 413 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263218232
MGI SNP Detail		 Chr18:34542078 Pkd2l2 within coordinates of
Tssr150460 514 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31610983
MGI SNP Detail		 Chr18:34542099 Pkd2l2 within coordinates of
Tssr150460 535 bp downstream
 SNP A/C C C C C C C A C C C C C C C C
rs243392882
MGI SNP Detail		 Chr18:34542120 Pkd2l2 within coordinates of
Tssr150460 556 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs265361329
MGI SNP Detail		 Chr18:34542148 Pkd2l2 within coordinates of
Tssr150460 584 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224507081
MGI SNP Detail		 Chr18:34542189 Pkd2l2 within coordinates of
Tssr150460 625 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs244552526
MGI SNP Detail		 Chr18:34542263 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 699 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31610982
MGI SNP Detail		 Chr18:34542339 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 775 bp downstream
 SNP A/G A A A A A A A A A A G A A A A
rs246126406
MGI SNP Detail		 Chr18:34542401 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 837 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs31610981
MGI SNP Detail		 Chr18:34542442 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 878 bp downstream
 SNP A/C A A A A A C A A A C A C A
rs579389324
MGI SNP Detail		 Chr18:34542455 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 891 bp downstream
Tssr5274 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582771781
MGI SNP Detail		 Chr18:34542476 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 912 bp downstream
Tssr150462 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237774043
MGI SNP Detail		 Chr18:34542489 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 925 bp downstream
Tssr150462 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs251315157
MGI SNP Detail		 Chr18:34542498 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 934 bp downstream
Tssr150462 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31610980
MGI SNP Detail		 Chr18:34542510 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 946 bp downstream
Tssr150462 within coordinates of
 SNP A/C A A A A A A C A A A C A A C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230567517
MGI SNP Detail		 Chr18:34542513 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Rr405581 within coordinates of
Tssr150460 949 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252560736
MGI SNP Detail		 Chr18:34542586 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Tssr150460 1022 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222609980
MGI SNP Detail		 Chr18:34542603 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Tssr150460 1039 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs48735744
MGI SNP Detail		 Chr18:34542668 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Tssr150460 1104 bp downstream
 SNP T T T T
rs31610979
MGI SNP Detail		 Chr18:34542757 Cpgi9817 within coordinates of
Pkd2l2 within coordinates of
Tssr150460 1193 bp downstream
 SNP G/T T T T T T T T T T T T T G T
rs584316083
MGI SNP Detail		 Chr18:34542975 Pkd2l2 within coordinates of
Tssr150460 1411 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262936482
MGI SNP Detail		 Chr18:34543001 Pkd2l2 within coordinates of
Tssr150460 1437 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225092241
MGI SNP Detail		 Chr18:34543045 Pkd2l2 within coordinates of
Tssr150460 1481 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs31610978
MGI SNP Detail		 Chr18:34543116 Pkd2l2 within coordinates of
Tssr150460 1552 bp downstream
 SNP G/T G G G G G G G G G G T G G G G
rs246150374
MGI SNP Detail		 Chr18:34543176 Pkd2l2 within coordinates of
Tssr150460 1612 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262845382
MGI SNP Detail		 Chr18:34543199 Pkd2l2 within coordinates of
Tssr150460 1635 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs218333073
MGI SNP Detail		 Chr18:34543214 Pkd2l2 within coordinates of
Tssr150460 1650 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs238294851
MGI SNP Detail		 Chr18:34543233 Pkd2l2 within coordinates of
Tssr150460 1669 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260864172
MGI SNP Detail		 Chr18:34543241 Pkd2l2 within coordinates of
Tssr150460 1677 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229555478
MGI SNP Detail		 Chr18:34543318 Pkd2l2 within coordinates of
Tssr150460 1754 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31610977
MGI SNP Detail		 Chr18:34543321 Pkd2l2 within coordinates of
Tssr150460 1757 bp downstream
 SNP A/G G A A A A A A A A A G A A A A A A
rs265624433
MGI SNP Detail		 Chr18:34543340 Pkd2l2 within coordinates of
Tssr150460 1776 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31610976
MGI SNP Detail		 Chr18:34543373 Pkd2l2 within coordinates of
Tssr150460 1809 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs255892468
MGI SNP Detail		 Chr18:34543410 Pkd2l2 within coordinates of
Tssr150460 1846 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211815693
MGI SNP Detail		 Chr18:34543438 Pkd2l2 within coordinates of
Tssr150460 1874 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230518120
MGI SNP Detail		 Chr18:34543455 Pkd2l2 within coordinates of
Tssr150460 1891 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246550889
MGI SNP Detail		 Chr18:34543457 Pkd2l2 within coordinates of
Tssr150460 1893 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217264152
MGI SNP Detail		 Chr18:34543479 Pkd2l2 within coordinates of
Tssr150460 1915 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232828579
MGI SNP Detail		 Chr18:34543543 Pkd2l2 within coordinates of
Tssr150460 1979 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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