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Mouse SNP Summary
Symbol
Name
ID 		Tssr152520
transcription start site region 152520
MGI:6080287

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Showing SNP(s) 1 - 45 of 45

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265520195
MGI SNP Detail		 Chr18:15195776 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Tssr152520 1728 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G T G G G G G G G G
rs29627093
MGI SNP Detail		 Chr18:15195812 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Tssr152520 1692 bp downstream
 SNP C/G G C C G C
rs257636622
MGI SNP Detail		 Chr18:15196001 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Tssr152520 1503 bp downstream
 SNP A/G G A
rs223844750
MGI SNP Detail		 Chr18:15196247 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Tssr152520 1257 bp downstream
 SNP C/T C T
rs586686620
MGI SNP Detail		 Chr18:15196355 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Tssr152520 1149 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224437655
MGI SNP Detail		 Chr18:15196847 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Rr534350 within coordinates of
Tssr152520 657 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T G G G G G G T G G T G G G G G G G G G
rs244552689
MGI SNP Detail		 Chr18:15196848 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Rr534350 within coordinates of
Tssr152520 656 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C T C C C C C C C C C
rs581627708
MGI SNP Detail		 Chr18:15196982 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Rr534350 within coordinates of
Tssr152520 522 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30108354
MGI SNP Detail		 Chr18:15196998 Cpgi9734 within coordinates of
Kctd1 within coordinates of
Rr534350 within coordinates of
Tssr152520 506 bp downstream
 SNP C/G G C G G C G
rs231385726
MGI SNP Detail		 Chr18:15197112 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 392 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257683847
MGI SNP Detail		 Chr18:15197151 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152512 within coordinates of
Tssr152520 353 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13475502
MGI SNP Detail		 Chr18:15197388 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152516 within coordinates of
Tssr152520 116 bp downstream
 SNP A/G G A G G A G
rs30028570
MGI SNP Detail		 Chr18:15197405 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152517 within coordinates of
Tssr152520 99 bp downstream
 SNP A/T T A T T A A
rs263711815
MGI SNP Detail		 Chr18:15197491 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152519 within coordinates of
Tssr152520 13 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G A G G G G G G G G G
rs222676017
MGI SNP Detail		 Chr18:15197522 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235742416
MGI SNP Detail		 Chr18:15197553 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 20 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248771853
MGI SNP Detail		 Chr18:15198005 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 472 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs30063876
MGI SNP Detail		 Chr18:15198092 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 559 bp upstream
 SNP C/T C C T
rs219308825
MGI SNP Detail		 Chr18:15198111 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 578 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238548158
MGI SNP Detail		 Chr18:15198125 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 592 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263291105
MGI SNP Detail		 Chr18:15198151 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 618 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29882838
MGI SNP Detail		 Chr18:15198164 Cpgi9734 within coordinates of
Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 631 bp upstream
 SNP C/T C C T
rs233134393
MGI SNP Detail		 Chr18:15198247 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 714 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247534849
MGI SNP Detail		 Chr18:15198417 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 884 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G A G G G G G G G G G
rs266234050
MGI SNP Detail		 Chr18:15198424 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 891 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224551096
MGI SNP Detail		 Chr18:15198430 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 897 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587101420
MGI SNP Detail		 Chr18:15198581 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 1048 bp upstream
 SNP A/C C C C C C A C C C A C A A A A A A A C C C A A A C C C C A C C C A A A A C C C A A C C C A C C
rs244646411
MGI SNP Detail		 Chr18:15198619 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 1086 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs52299658
MGI SNP Detail		 Chr18:15198656 Gm58434 within coordinates of
Kctd1 within coordinates of
Tssr152520 1123 bp upstream
 SNP C/T C T
rs264967633
MGI SNP Detail		 Chr18:15198691 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1158 bp upstream
 SNP C/T T C
rs30024110
MGI SNP Detail		 Chr18:15198749 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1216 bp upstream
 SNP A/C C A A C A
rs215420851
MGI SNP Detail		 Chr18:15198789 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1256 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240524480
MGI SNP Detail		 Chr18:15198799 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1266 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253644636
MGI SNP Detail		 Chr18:15198910 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1377 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217123343
MGI SNP Detail		 Chr18:15198954 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1421 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229960236
MGI SNP Detail		 Chr18:15199054 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1521 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248935570
MGI SNP Detail		 Chr18:15199078 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1545 bp upstream
 SNP A/C C C C C C C A A C C A A C C C C C C C C A C C C C C C C C C C C C C A A C C C C C C A C C C C C C C C C C
rs219275480
MGI SNP Detail		 Chr18:15199082 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1549 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246906094
MGI SNP Detail		 Chr18:15199094 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1561 bp upstream
 SNP C/T C T
rs262976530
MGI SNP Detail		 Chr18:15199147 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1614 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225161194
MGI SNP Detail		 Chr18:15199380 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1847 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G A G G G G G G G G G
rs250220536
MGI SNP Detail		 Chr18:15199453 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1920 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31128149
MGI SNP Detail		 Chr18:15199459 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1926 bp upstream
 SNP C/T C T T T
rs218258474
MGI SNP Detail		 Chr18:15199479 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1946 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238442140
MGI SNP Detail		 Chr18:15199525 Gm58434 within coordinates of
Kctd1 within coordinates of
Rr393314 within coordinates of
Tssr152520 1992 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 45 of 45
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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