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Mouse SNP Summary
Symbol
Name
ID
Tssr152706
transcription start site region 152706
MGI:6080473

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256082073
MGI SNP Detail
Alliance Variant
Chr18:31578454 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1926 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225078528
MGI SNP Detail
Alliance Variant
Chr18:31578463 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1917 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs242349136
MGI SNP Detail
Alliance Variant
Chr18:31578513 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1867 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A G A A A A
rs261593729
MGI SNP Detail
Alliance Variant
Chr18:31578616 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1764 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231993663
MGI SNP Detail
Alliance Variant
Chr18:31578645 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1735 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs258547899
MGI SNP Detail
Alliance Variant
Chr18:31578647 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1733 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214166089
MGI SNP Detail
Alliance Variant
Chr18:31578948 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1432 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229907658
MGI SNP Detail
Alliance Variant
Chr18:31578950 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1430 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251321246
MGI SNP Detail
Alliance Variant
Chr18:31578955 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1425 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs211731836
MGI SNP Detail
Alliance Variant
Chr18:31579116 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1264 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs578473584
MGI SNP Detail
Alliance Variant
Chr18:31579174 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1206 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230459267
MGI SNP Detail
Alliance Variant
Chr18:31579266 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1114 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs252611855
MGI SNP Detail
Alliance Variant
Chr18:31579325 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1055 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs217272107
MGI SNP Detail
Alliance Variant
Chr18:31579330 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1050 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs237866612
MGI SNP Detail
Alliance Variant
Chr18:31579331 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1049 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263258530
MGI SNP Detail
Alliance Variant
Chr18:31579336 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1044 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222479573
MGI SNP Detail
Alliance Variant
Chr18:31579365 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 1015 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247054444
MGI SNP Detail
Alliance Variant
Chr18:31579446 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 934 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G
rs249828387
MGI SNP Detail
Alliance Variant
Chr18:31579550 Gm26658 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 830 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs218927344
MGI SNP Detail
Alliance Variant
Chr18:31579622 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 758 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242023321
MGI SNP Detail
Alliance Variant
Chr18:31579624 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Syt4 mRNA-UTR
Tssr152706 756 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs261333676
MGI SNP Detail
Alliance Variant
Chr18:31579856 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Tssr152706 524 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232537042
MGI SNP Detail
Alliance Variant
Chr18:31580020 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Tssr152706 360 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246909212
MGI SNP Detail
Alliance Variant
Chr18:31580049 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Tssr152706 331 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C C T T T
rs265139533
MGI SNP Detail
Alliance Variant
Chr18:31580156 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Tssr152706 224 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231202190
MGI SNP Detail
Alliance Variant
Chr18:31580162 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 Intron
Tssr152706 218 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244358178
MGI SNP Detail
Alliance Variant
Chr18:31580317 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 mRNA-UTR
Tssr152706 63 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs211889035
MGI SNP Detail
Alliance Variant
Chr18:31580324 Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 mRNA-UTR
Tssr152706 56 bp downstream
SNP A/C C C C C A C C C C A C C C C C C C C C C C C C C C A C C C C C C A C C A C C C C C C C C C C A C C C A C C
rs224096311
MGI SNP Detail
Alliance Variant
Chr18:31580337 Cpgi9787 within coordinates of
Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 mRNA-UTR
Tssr152706 43 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs246370703
MGI SNP Detail
Alliance Variant
Chr18:31580352 Cpgi9787 within coordinates of
Gm26658 within coordinates of
Rr535263 within coordinates of
Syt4 mRNA-UTR
Tssr152706 28 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs218757849
MGI SNP Detail
Chr18:31580508 Cpgi9787 within coordinates of
Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 127 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239911457
MGI SNP Detail
Chr18:31580615 Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 234 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259478301
MGI SNP Detail
Chr18:31580671 Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 290 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214038683
MGI SNP Detail
Chr18:31580677 Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 296 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs236916326
MGI SNP Detail
Chr18:31580767 Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 386 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs249484201
MGI SNP Detail
Chr18:31580844 Gm26658 within coordinates of
Rr535264 within coordinates of
Tssr152706 463 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218983529
MGI SNP Detail
Chr18:31581048 Gm26658 within coordinates of
Tssr152706 667 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs235704102
MGI SNP Detail
Chr18:31581123 Gm26658 within coordinates of
Tssr152706 742 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs255320469
MGI SNP Detail
Chr18:31581149 Gm26658 within coordinates of
Tssr152706 768 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A C A A A A A A C A A A A A A A A A A
rs224313436
MGI SNP Detail
Chr18:31581201 Gm26658 within coordinates of
Tssr152706 820 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249597586
MGI SNP Detail
Chr18:31581484 Gm26658 within coordinates of
Tssr152706 1103 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262586828
MGI SNP Detail
Chr18:31581577 Gm26658 within coordinates of
Tssr152706 1196 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223446831
MGI SNP Detail
Chr18:31581652 Gm26658 within coordinates of
Tssr152706 1271 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs236101576
MGI SNP Detail
Chr18:31581653 Gm26658 within coordinates of
Tssr152706 1272 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs254879129
MGI SNP Detail
Chr18:31581680 Gm26658 within coordinates of
Tssr152706 1299 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224050556
MGI SNP Detail
Chr18:31581682 Gm26658 within coordinates of
Tssr152706 1301 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246521859
MGI SNP Detail
Chr18:31581691 Gm26658 within coordinates of
Tssr152706 1310 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266046197
MGI SNP Detail
Chr18:31581694 Gm26658 within coordinates of
Tssr152706 1313 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231396580
MGI SNP Detail
Chr18:31581707 Gm26658 within coordinates of
Tssr152706 1326 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258210910
MGI SNP Detail
Chr18:31581730 Gm26658 within coordinates of
Tssr152706 1349 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213674595
MGI SNP Detail
Chr18:31581815 Gm26658 within coordinates of
Tssr152706 1434 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232806791
MGI SNP Detail
Chr18:31581816 Gm26658 within coordinates of
Tssr152706 1435 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243375722
MGI SNP Detail
Chr18:31581842 Gm26658 within coordinates of
Tssr152706 1461 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs212767204
MGI SNP Detail
Chr18:31581978 Gm26658 within coordinates of
Tssr152706 1597 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235671596
MGI SNP Detail
Chr18:31581997 Gm26658 within coordinates of
Tssr152706 1616 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261050265
MGI SNP Detail
Chr18:31582032 Gm26658 within coordinates of
Tssr152706 1651 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224283849
MGI SNP Detail
Chr18:31582162 Gm26658 within coordinates of
Tssr152706 1781 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233503519
MGI SNP Detail
Chr18:31582317 Gm26658 within coordinates of
Rr535265 within coordinates of
Tssr152706 1936 bp upstream
SNP A/G G A
rs262061064
MGI SNP Detail
Chr18:31582352 Gm26658 within coordinates of
Rr535265 within coordinates of
Tssr152706 1971 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 59 of 59

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/29/2025
MGI 6.24
The Jackson Laboratory

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