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Mouse SNP Summary
Symbol
Name
ID 		Tssr154060
transcription start site region 154060
MGI:6081827

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215737772
MGI SNP Detail
Alliance Variant		 Chr18:81028698 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1901 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234785571
MGI SNP Detail
Alliance Variant		 Chr18:81029023 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1576 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254337583
MGI SNP Detail
Alliance Variant		 Chr18:81029051 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1548 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223376259
MGI SNP Detail
Alliance Variant		 Chr18:81029075 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1524 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs237019392
MGI SNP Detail
Alliance Variant		 Chr18:81029100 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1499 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261040434
MGI SNP Detail
Alliance Variant		 Chr18:81029259 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1340 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221879081
MGI SNP Detail
Alliance Variant		 Chr18:81029307 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1292 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246165488
MGI SNP Detail
Alliance Variant		 Chr18:81029331 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1268 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262827730
MGI SNP Detail
Alliance Variant		 Chr18:81029360 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1239 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226890110
MGI SNP Detail
Alliance Variant		 Chr18:81029530 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1069 bp downstream
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G A G G A G A G G G G G G G G G G
rs240430011
MGI SNP Detail
Alliance Variant		 Chr18:81029551 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1048 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259401734
MGI SNP Detail
Alliance Variant		 Chr18:81029553 Cpgi10312 within coordinates of
Sall3 Intron
Sall3 mRNA-UTR
Tssr154060 1046 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229478874
MGI SNP Detail
Alliance Variant		 Chr18:81029660 Cpgi10312 within coordinates of
Sall3 Intron
Tssr154060 939 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242537466
MGI SNP Detail
Alliance Variant		 Chr18:81029693 Cpgi10312 within coordinates of
Sall3 Coding-NonSynonymous
Tssr154060 906 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213586737
MGI SNP Detail
Alliance Variant		 Chr18:81030092 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Sall3 mRNA-UTR
Tssr154060 507 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581274051
MGI SNP Detail		 Chr18:81030278 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 321 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs229631160
MGI SNP Detail		 Chr18:81030323 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 276 bp downstream
 SNP C/T C C C C C C C C C C C C T C C C C C C T C T C T C C C C C C
rs255982376
MGI SNP Detail		 Chr18:81030387 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 212 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs215316938
MGI SNP Detail		 Chr18:81030438 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 161 bp downstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C T C C C C T C C C C C C C T C C T C T C C C C C C C C C C
rs234407059
MGI SNP Detail		 Chr18:81030440 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 159 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254379982
MGI SNP Detail		 Chr18:81030461 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 138 bp downstream
 SNP A/G G G G G A G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G A G A G G G G G G G G G G
rs220577752
MGI SNP Detail		 Chr18:81030470 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 129 bp downstream
 SNP C/G C G
rs217348651
MGI SNP Detail		 Chr18:81030553 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 46 bp downstream
 SNP C/T C C C T C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C T C C T C T C C C C C C C C C C
rs229862927
MGI SNP Detail		 Chr18:81030646 Cpgi10312 within coordinates of
Rr541638 within coordinates of
Tssr154060 15 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C G C C C C C C G C C C C
rs256195345
MGI SNP Detail		 Chr18:81030880 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 249 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221932777
MGI SNP Detail		 Chr18:81030911 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 280 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243388873
MGI SNP Detail		 Chr18:81031028 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 397 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262529214
MGI SNP Detail		 Chr18:81031080 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 449 bp upstream
 SNP A/C C C A C A A A C A A A A A A A A A A C A A C A A A A C C A C C C A A A C A A C A C A A A A A C A A A C
rs220846964
MGI SNP Detail		 Chr18:81031100 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 469 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs578572496
MGI SNP Detail		 Chr18:81031203 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 572 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs240054662
MGI SNP Detail		 Chr18:81031314 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 683 bp upstream
 SNP C/G G G G G C G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G C G G C G C G G G G G C G G G G
rs259441072
MGI SNP Detail		 Chr18:81031332 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 701 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229600423
MGI SNP Detail		 Chr18:81031367 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 736 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244488477
MGI SNP Detail		 Chr18:81031556 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 925 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581888089
MGI SNP Detail		 Chr18:81031614 Cpgi10312 within coordinates of
Gm27239 within coordinates of
Tssr154060 983 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584190434
MGI SNP Detail		 Chr18:81031700 Gm27239 within coordinates of
Tssr154060 1069 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262102897
MGI SNP Detail		 Chr18:81031761 Gm27239 within coordinates of
Tssr154060 1130 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs230499007
MGI SNP Detail		 Chr18:81031802 Tssr154060 1171 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251311569
MGI SNP Detail		 Chr18:81031825 Tssr154060 1194 bp upstream
 SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G A G G A G A G G G G G A G G G G
rs265431384
MGI SNP Detail		 Chr18:81031941 Tssr154060 1310 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227830654
MGI SNP Detail		 Chr18:81031968 Tssr154060 1337 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579356748
MGI SNP Detail		 Chr18:81031973 Tssr154060 1342 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs247733017
MGI SNP Detail		 Chr18:81032049 Tssr154060 1418 bp upstream
 SNP G/T T T T T G T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T G T T G T G T T T T T G T T T T
rs217094810
MGI SNP Detail		 Chr18:81032060 Tssr154060 1429 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs229888795
MGI SNP Detail		 Chr18:81032105 Tssr154060 1474 bp upstream
 SNP A/T T T T T A T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T A T T A T A T T T T T T T T T T
rs254148448
MGI SNP Detail		 Chr18:81032134 Tssr154060 1503 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213640360
MGI SNP Detail		 Chr18:81032186 Tssr154060 1555 bp upstream
 SNP G/T T T T T G T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T G T T G T G T T T T T G T T T T
rs238900348
MGI SNP Detail		 Chr18:81032272 Tssr154060 1641 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258038735
MGI SNP Detail		 Chr18:81032306 Tssr154060 1675 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs220877301
MGI SNP Detail		 Chr18:81032359 Tssr154060 1728 bp upstream
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G A G G A G A G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233722671
MGI SNP Detail		 Chr18:81032422 Tssr154060 1791 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252714614
MGI SNP Detail		 Chr18:81032436 Tssr154060 1805 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C T C C C C T C C C C C C C C C C
rs222752274
MGI SNP Detail		 Chr18:81032466 Tssr154060 1835 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241676146
MGI SNP Detail		 Chr18:81032579 Tssr154060 1948 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 54 of 54
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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07/29/2025
MGI 6.24 		The Jackson Laboratory