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Mouse SNP Summary
Symbol
Name
ID 		Tssr155287
transcription start site region 155287
MGI:6083054

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47830739
MGI SNP Detail
Alliance Variant		 Chr19:11796859 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1986 bp upstream
 SNP A A
rs45813754
MGI SNP Detail
Alliance Variant		 Chr19:11796879 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1966 bp upstream
 SNP G G
rs38588776
MGI SNP Detail
Alliance Variant		 Chr19:11796880 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1965 bp upstream
 SNP A/T T A T T T T T A
rs216831404
MGI SNP Detail
Alliance Variant		 Chr19:11796882 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1963 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs231647732
MGI SNP Detail
Alliance Variant		 Chr19:11796893 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1952 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A G A
rs50153145
MGI SNP Detail
Alliance Variant		 Chr19:11796903 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1942 bp upstream
 SNP G G
rs37236658
MGI SNP Detail
Alliance Variant		 Chr19:11796911 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1934 bp upstream
 SNP G/T T G T T T T G G G T G G
rs37536875
MGI SNP Detail
Alliance Variant		 Chr19:11796926 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1919 bp upstream
 SNP A/G A G A G A A A A G G G A A
rs263700588
MGI SNP Detail
Alliance Variant		 Chr19:11796989 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1856 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225947712
MGI SNP Detail
Alliance Variant		 Chr19:11796990 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1855 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243309267
MGI SNP Detail
Alliance Variant		 Chr19:11796996 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1849 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs36463497
MGI SNP Detail
Alliance Variant		 Chr19:11797048 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1797 bp upstream
 SNP C/T C T C T C C C C T T T T C T C
rs37769615
MGI SNP Detail
Alliance Variant		 Chr19:11797129 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1716 bp upstream
 SNP C/T C C C C C C C C C C C C C T
rs36409022
MGI SNP Detail
Alliance Variant		 Chr19:11797174 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1671 bp upstream
 SNP C/T T T T T T T T T T T T T T C
rs30665304
MGI SNP Detail
Alliance Variant		 Chr19:11797210 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1635 bp upstream
 SNP A/G A A G
rs36284252
MGI SNP Detail
Alliance Variant		 Chr19:11797292 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1553 bp upstream
 SNP A/T T A T A T T T A A A A T A T
rs218318711
MGI SNP Detail
Alliance Variant		 Chr19:11797313 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1532 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A G A
rs242474479
MGI SNP Detail
Alliance Variant		 Chr19:11797323 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1522 bp upstream
 SNP A/T A A A T A A T T A A A A A A A A A A A A A T A A A A T A T A A A A A T T A A A T A A A A T T A A A T A A A
rs579751351
MGI SNP Detail
Alliance Variant		 Chr19:11797325 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1520 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs266010200
MGI SNP Detail
Alliance Variant		 Chr19:11797330 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1515 bp upstream
 SNP A/T A A A T A A T T A A A A A A A A A A A A A T T A A T T T T T A A A T T T A A A T T A A A T T A A T T T T
rs233646053
MGI SNP Detail
Alliance Variant		 Chr19:11797331 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1514 bp upstream
 SNP A/C A A A C A A C C A A A A A A A A A A A A A C C A A C C C C C A A A C C C A A A C C A A A C C A A C C C C
rs37134142
MGI SNP Detail
Alliance Variant		 Chr19:11797347 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1498 bp upstream
 SNP C/T T C T C T T T T C T T
rs263384814
MGI SNP Detail
Alliance Variant		 Chr19:11797365 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1480 bp upstream
 SNP C/T T T T C T T C C T T T T T T T T T T T T T C C T T C C C C T T T C C C T T T C C T T T C C T T T C C C C
rs36911106
MGI SNP Detail
Alliance Variant		 Chr19:11797373 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1472 bp upstream
 SNP C/T C T C T C C C T T T T C T T
rs245683539
MGI SNP Detail
Alliance Variant		 Chr19:11797387 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1458 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212030329
MGI SNP Detail
Alliance Variant		 Chr19:11797448 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1397 bp upstream
 SNP C/T C C C T C C T T C C C C C C C C C C C C C T T C C T T T T C C C C T T T C C C T T C C C T T C C C T T C T
rs230595032
MGI SNP Detail
Alliance Variant		 Chr19:11797452 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1393 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs253795481
MGI SNP Detail
Alliance Variant		 Chr19:11797453 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1392 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs218953256
MGI SNP Detail
Alliance Variant		 Chr19:11797457 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1388 bp upstream
 SNP C/G G G G C G G C C G G G G G G G G G G G G G C C G G C C C C G G G G C C C G G G C C G G G C C G G G C C G C
rs240444555
MGI SNP Detail
Alliance Variant		 Chr19:11797478 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1367 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs37873424
MGI SNP Detail
Alliance Variant		 Chr19:11797489 Cpgi10635 within coordinates of
Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1356 bp upstream
 SNP C/T C C T C T C C T C T T T T C T T
rs46725512
MGI SNP Detail
Alliance Variant		 Chr19:11797546 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1299 bp upstream
 SNP A/G A G
rs231470345
MGI SNP Detail
Alliance Variant		 Chr19:11797607 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1238 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs51822948
MGI SNP Detail
Alliance Variant		 Chr19:11797651 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1194 bp upstream
 SNP C/G G C
rs46792249
MGI SNP Detail
Alliance Variant		 Chr19:11797655 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1190 bp upstream
 SNP A/C C A
rs46240042
MGI SNP Detail
Alliance Variant		 Chr19:11797666 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1179 bp upstream
 SNP A/G G A
rs37493875
MGI SNP Detail
Alliance Variant		 Chr19:11797685 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1160 bp upstream
 SNP A/G G A G A G G G G A A A A G A G
rs48447682
MGI SNP Detail
Alliance Variant		 Chr19:11797738 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1107 bp upstream
 SNP A/G A G
rs244882593
MGI SNP Detail
Alliance Variant		 Chr19:11797773 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1072 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259703801
MGI SNP Detail
Alliance Variant		 Chr19:11797787 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1058 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs225572187
MGI SNP Detail
Alliance Variant		 Chr19:11797819 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Rr544387 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1026 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46822931
MGI SNP Detail
Alliance Variant		 Chr19:11797820 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Rr544387 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1025 bp upstream
 SNP C/G G C
rs49491839
MGI SNP Detail
Alliance Variant		 Chr19:11797824 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Rr544387 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1021 bp upstream
 SNP A/G A G
rs228672100
MGI SNP Detail
Alliance Variant		 Chr19:11797843 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 1002 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs50346212
MGI SNP Detail
Alliance Variant		 Chr19:11797850 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 995 bp upstream
 SNP A/G G A
rs218960378
MGI SNP Detail
Alliance Variant		 Chr19:11797866 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 979 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs49442837
MGI SNP Detail
Alliance Variant		 Chr19:11797873 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 972 bp upstream
 SNP A/T A A A T A A T T A A A A A A A A A A A A A T A A A T T A T A A A A A T T A A A T A A A A T T A A A T T A T
rs253075294
MGI SNP Detail
Alliance Variant		 Chr19:11797876 Gm41810 within coordinates of
Gm59062 within coordinates of
Rr544386 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 969 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216068790
MGI SNP Detail
Alliance Variant		 Chr19:11797916 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 929 bp upstream
 SNP A/T T T T A T T A A T T T T T T T T T T T A T A A T T A A A T T T T A A A T T T A A T T T A A T T T A A T
rs581099516
MGI SNP Detail
Alliance Variant		 Chr19:11797949 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 896 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231612947
MGI SNP Detail
Alliance Variant		 Chr19:11797951 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 894 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs107857890
MGI SNP Detail
Alliance Variant		 Chr19:11797962 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 883 bp upstream
 SNP A A
rs108435636
MGI SNP Detail
Alliance Variant		 Chr19:11797965 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 880 bp upstream
 SNP A/G G A
rs235727692
MGI SNP Detail
Alliance Variant		 Chr19:11798023 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 822 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263991081
MGI SNP Detail
Alliance Variant		 Chr19:11798080 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 765 bp upstream
 SNP C/G G G G C G G C C G G G G G G G G G G G G G C C G G C C C C G G G G C C C G G G C C G G G C C G G G C C G C
rs227000370
MGI SNP Detail
Alliance Variant		 Chr19:11798083 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 762 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs248249788
MGI SNP Detail
Alliance Variant		 Chr19:11798085 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 760 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs253887722
MGI SNP Detail
Alliance Variant		 Chr19:11798086 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 759 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs219368628
MGI SNP Detail
Alliance Variant		 Chr19:11798125 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 720 bp upstream
 SNP A/G G G G A G G A A G G G G G G G G G G G G G A A G G A A A A G G G G A A A G G G A A G G G A A G G G A A G A
rs387457799
MGI SNP Detail
Alliance Variant		 Chr19:11798187 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 658 bp upstream
 SNP C/T C C C T C C T T C C C C C C C C C C C C C T T C C T T T T C C C C T T T C C C T T C C C T T C C C T T C T
rs386928022
MGI SNP Detail
Alliance Variant		 Chr19:11798190 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 655 bp upstream
 SNP C/G C C C G C C G G C C C C C C C C C C C C C G G C C G G G G C C C C G G G C C C G G C C C G G C C C G G C G
rs239491457
MGI SNP Detail
Alliance Variant		 Chr19:11798215 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 630 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs255675578
MGI SNP Detail
Alliance Variant		 Chr19:11798227 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 618 bp upstream
 SNP C/G G G G C G G C C G G G G G G G G G G G G G C C G G C C C C G G G G C C C G G G C C G G G C C G G G C C G
rs228867858
MGI SNP Detail
Alliance Variant		 Chr19:11798232 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 613 bp upstream
 SNP A/G G G G A G G A A G G G G G G G G G G G G G A A G G A A A A G G G G A A A G G G A A G G G A A G G A A A G
rs247381884
MGI SNP Detail
Alliance Variant		 Chr19:11798234 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 611 bp upstream
 SNP G/T T T T G T T G G T T T T T T T T T T T T T G G T T G G G G T T T T G G G T T T G G T T T G G T T G G G T
rs266128085
MGI SNP Detail
Alliance Variant		 Chr19:11798277 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 568 bp upstream
 SNP C/T T T T C T T C C T T T T T T T T T T T T T C C T T C C C C T T T T C C C T T T C C T T T C C T T T C C T
rs36811353
MGI SNP Detail
Alliance Variant		 Chr19:11798285 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 560 bp upstream
 SNP A/G G G G G G G A A G A G
rs36621663
MGI SNP Detail
Alliance Variant		 Chr19:11798295 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 550 bp upstream
 SNP A/G G A G G G G G A A G A G G G
rs213564827
MGI SNP Detail
Alliance Variant		 Chr19:11798311 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 534 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225448575
MGI SNP Detail
Alliance Variant		 Chr19:11798416 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 429 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244716398
MGI SNP Detail
Alliance Variant		 Chr19:11798428 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 417 bp upstream
 SNP A/G A A G A A G G A A A A A A A A A A A A A G G A A G G G G A A A G G G A A A G G A A A G G A G G G A G
rs212122150
MGI SNP Detail
Alliance Variant		 Chr19:11798445 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 400 bp upstream
 SNP C/T T T C T T C C T T T T T T T T T T T T T C C T T C C C C T T T C C C T T T C C T T T C C T C C C T C
rs237352809
MGI SNP Detail
Alliance Variant		 Chr19:11798459 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 386 bp upstream
 SNP A/T A A T A A T T A A A A A A A A A A A A A T T A A T T T T A A A T T T A A A T T A A A T T A T T T A T
rs254023044
MGI SNP Detail
Alliance Variant		 Chr19:11798472 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 373 bp upstream
 SNP A/T A A T A A T T A A A A A A A A A A A A A A A A A A A A A A T T A A A T A A A A A T A A T A A
rs219549843
MGI SNP Detail
Alliance Variant		 Chr19:11798484 Gm41810 within coordinates of
Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 361 bp upstream
 SNP A/C A A C A A C C A A A A A A A A A A A A A C A A A A C A C A A A A C C A A A C A A A A C A A C A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253822097
MGI SNP Detail
Alliance Variant		 Chr19:11798494 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 351 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G A A G G A A A A G G G A A A G G G A A G G G A A G A A A G A
rs219804375
MGI SNP Detail
Alliance Variant		 Chr19:11798501 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 344 bp upstream
 SNP C/T C C T C C T T C C C C C C C C C C C C T T C C T T T T C C C T T T C C C T T C C C T T C T T T C T
rs387455707
MGI SNP Detail
Alliance Variant		 Chr19:11798574 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 271 bp upstream
 SNP A/T T T T T A A T T T T T T T T T T T T A T T A A T T T A T T T A T T T A A T A A T
rs387877686
MGI SNP Detail
Alliance Variant		 Chr19:11798577 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 268 bp upstream
 SNP A/T T T T T A A T T T T T T T T T T T T A T T A A T T T A T T T A T T T A A T T A A T
rs232482463
MGI SNP Detail
Alliance Variant		 Chr19:11798628 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 217 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G A A G G A A A A A G G G A A A G G G A A G G G A A G G G A A A A
rs249391882
MGI SNP Detail
Alliance Variant		 Chr19:11798636 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 209 bp upstream
 SNP C/T T T C T T C C T T T T T T T T T T T T C C T T C C C C T T T T C C C T T T C C T T T C C T T T C C T C
rs221243631
MGI SNP Detail
Alliance Variant		 Chr19:11798643 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 202 bp upstream
 SNP C/T T T C T T C C T T T T T T T T T T C T C C T T C C C C C T T T C C C T T T C C T T T C C T T C C C C C
rs249723154
MGI SNP Detail
Alliance Variant		 Chr19:11798652 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 193 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G G A A G G A A A A G G G G A A A G G G A A G G G A A G G G A A G A
rs264283494
MGI SNP Detail
Alliance Variant		 Chr19:11798667 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 178 bp upstream
 SNP C/G G G C G G C C G G G G G G G G G G G G G C C G G C C C C G G G G C C C G G G C C G G G C C G G C C C G C
rs224153549
MGI SNP Detail
Alliance Variant		 Chr19:11798678 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 167 bp upstream
 SNP A/G A A G A A G G A A A A A A A A A A A A A G G A A G G G G A A A A G G G A A A G G A A A G G A A G G A G
rs255193562
MGI SNP Detail
Alliance Variant		 Chr19:11798695 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 150 bp upstream
 SNP C/T C C T C C T T C C C C C C C C C C C C C T T C C T T T T C C C C T T T C C C T T C C C T T C C T T T C T
rs225980180
MGI SNP Detail
Alliance Variant		 Chr19:11798710 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 135 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs244681746
MGI SNP Detail
Alliance Variant		 Chr19:11798711 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 134 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs264694466
MGI SNP Detail
Alliance Variant		 Chr19:11798732 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 113 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229053027
MGI SNP Detail
Alliance Variant		 Chr19:11798749 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 96 bp upstream
 SNP A/T A A T A A T T A A A A A A A A A A A A A T T A A T T T T A A A A T T T A A A T T A A A T T A A A T T A T
rs259254601
MGI SNP Detail
Alliance Variant		 Chr19:11798759 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 86 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G G A A G G A A A A G G G G A A A G G G A A G G G A A G G G A A G A
rs219368074
MGI SNP Detail
Alliance Variant		 Chr19:11798761 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 84 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs234311090
MGI SNP Detail
Alliance Variant		 Chr19:11798764 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 81 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G G A A G G A A A A G G G G A A A G G G A A G G G A A G G G A A G A
rs247632113
MGI SNP Detail
Alliance Variant		 Chr19:11798767 Gm59062 within coordinates of
Stx3 mRNA-UTR
Stx3 Noncoding-Transcript-Variant
Tssr155287 78 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs213880043
MGI SNP Detail		 Chr19:11798780 Gm59062 within coordinates of
Tssr155287 65 bp upstream
 SNP A/G A A G A A G G A A A A A A A A A A A A A G G A A G G G A A A A G G A A A G G A A A G A A A G G A G
rs233176712
MGI SNP Detail		 Chr19:11798782 Gm59062 within coordinates of
Tssr155287 63 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G G A A G G A A A G G G G A A G G G A A G G G A G G G A A G A
rs249923965
MGI SNP Detail		 Chr19:11798785 Gm59062 within coordinates of
Tssr155287 60 bp upstream
 SNP A/G G G A G G A A G G G G G G G G G G G G G A G G G G A G A G G G G G A A G G G A G G G G A A G G G A G G G
rs37291663
MGI SNP Detail		 Chr19:11798814 Gm59062 within coordinates of
Tssr155287 31 bp upstream
 SNP C/T C C C C C C T T C C
rs584749648
MGI SNP Detail		 Chr19:11798844 Gm59062 within coordinates of
Tssr155287 1 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584979269
MGI SNP Detail		 Chr19:11798886 Gm59062 within coordinates of
Tssr155287 27 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 100 of 170
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory