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Mouse SNP Summary
Symbol
Name
ID 		Tssr161127
transcription start site region 161127
MGI:6088894

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580027773
MGI SNP Detail		 ChrX:65690994 DXMit87 within coordinates of
Gm61789 within coordinates of
Tssr161127 1988 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213604258
MGI SNP Detail		 ChrX:65691111 Gm61789 within coordinates of
Tssr161127 1871 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238955127
MGI SNP Detail		 ChrX:65691323 Gm61789 within coordinates of
Tssr161127 1659 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258336440
MGI SNP Detail		 ChrX:65691460 Gm61789 within coordinates of
Tssr161127 1522 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216719316
MGI SNP Detail		 ChrX:65691471 Gm61789 within coordinates of
Tssr161127 1511 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239312632
MGI SNP Detail		 ChrX:65691515 Gm61789 within coordinates of
Tssr161127 1467 bp upstream
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C T
rs253002975
MGI SNP Detail		 ChrX:65691585 Gm61789 within coordinates of
Tssr161127 1397 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223017306
MGI SNP Detail		 ChrX:65691703 Gm61789 within coordinates of
Tssr161127 1279 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236125977
MGI SNP Detail		 ChrX:65691796 Gm61789 within coordinates of
Tssr161127 1186 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs249126093
MGI SNP Detail		 ChrX:65691797 Gm61789 within coordinates of
Tssr161127 1185 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs583537410
MGI SNP Detail		 ChrX:65691805 Gm61789 within coordinates of
Tssr161127 1177 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs261827654
MGI SNP Detail		 ChrX:65691886 Gm61789 within coordinates of
Tssr161127 1096 bp upstream
 SNP C/T C T
rs222945098
MGI SNP Detail		 ChrX:65691981 Gm61789 within coordinates of
Tssr161127 1001 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs247261602
MGI SNP Detail		 ChrX:65692277 Gm61789 within coordinates of
Tssr161127 705 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263220294
MGI SNP Detail		 ChrX:65692328 Gm61789 within coordinates of
Tssr161127 654 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs233196581
MGI SNP Detail		 ChrX:65692365 Gm61789 within coordinates of
Tssr161127 617 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs247708896
MGI SNP Detail		 ChrX:65692461 Gm61789 within coordinates of
Rr691649 within coordinates of
Tssr161127 521 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs261393950
MGI SNP Detail		 ChrX:65692466 Gm61789 within coordinates of
Rr691649 within coordinates of
Tssr161127 516 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224121567
MGI SNP Detail		 ChrX:65692506 Gm61789 within coordinates of
Rr691649 within coordinates of
Tssr161127 476 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244180898
MGI SNP Detail
Alliance Variant		 ChrX:65692608 Gm61789 within coordinates of
Rr691649 within coordinates of
Slitrk2 mRNA-UTR
Tssr161127 374 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213494722
MGI SNP Detail
Alliance Variant		 ChrX:65692983 Gm61789 within coordinates of
Rr691650 within coordinates of
Slitrk2 mRNA-UTR
Tssr161127 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230874650
MGI SNP Detail
Alliance Variant		 ChrX:65693056 Gm61789 within coordinates of
Rr691650 within coordinates of
Slitrk2 mRNA-UTR
Tssr161127 56 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33843072
MGI SNP Detail
Alliance Variant		 ChrX:65693086 Gm61789 within coordinates of
Rr691651 within coordinates of
Slitrk2 mRNA-UTR
Tssr161127 86 bp downstream
 SNP G/T G G G G G G G G G G G G G G T
rs216338884
MGI SNP Detail
Alliance Variant		 ChrX:65693133 Rr691651 within coordinates of
Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 133 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241677241
MGI SNP Detail
Alliance Variant		 ChrX:65693178 Rr691651 within coordinates of
Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 178 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33843071
MGI SNP Detail
Alliance Variant		 ChrX:65693199 Rr691651 within coordinates of
Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 199 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs211866103
MGI SNP Detail
Alliance Variant		 ChrX:65693262 Rr691651 within coordinates of
Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 262 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31201213
MGI SNP Detail
Alliance Variant		 ChrX:65693332 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 332 bp downstream
 SNP A/G A G A G A G A G A A A G G A G G A G
rs249175062
MGI SNP Detail
Alliance Variant		 ChrX:65693408 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 408 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31704842
MGI SNP Detail
Alliance Variant		 ChrX:65693507 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 507 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs237479554
MGI SNP Detail
Alliance Variant		 ChrX:65693670 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 670 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31704841
MGI SNP Detail
Alliance Variant		 ChrX:65693684 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 684 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs225082005
MGI SNP Detail
Alliance Variant		 ChrX:65693685 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 685 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs242052117
MGI SNP Detail
Alliance Variant		 ChrX:65693706 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 706 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs33843070
MGI SNP Detail
Alliance Variant		 ChrX:65693749 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 749 bp downstream
 SNP A/G A A A A A A A A A A A A A A G
rs218321912
MGI SNP Detail
Alliance Variant		 ChrX:65693760 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 760 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs238191278
MGI SNP Detail
Alliance Variant		 ChrX:65693864 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 864 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs33843069
MGI SNP Detail
Alliance Variant		 ChrX:65693878 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 878 bp downstream
 SNP A/C C C C C C C C C C C A C C A C
rs231009464
MGI SNP Detail
Alliance Variant		 ChrX:65693931 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 931 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252279868
MGI SNP Detail
Alliance Variant		 ChrX:65693957 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 957 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265701819
MGI SNP Detail
Alliance Variant		 ChrX:65694219 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1219 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs31704840
MGI SNP Detail
Alliance Variant		 ChrX:65694346 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1346 bp downstream
 SNP G/T T T T T T T G T T T T T T T T
rs579922082
MGI SNP Detail
Alliance Variant		 ChrX:65694407 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1407 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247143620
MGI SNP Detail
Alliance Variant		 ChrX:65694553 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1553 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33843068
MGI SNP Detail
Alliance Variant		 ChrX:65694554 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1554 bp downstream
 SNP C/T C C C C C C C C C C T C C T C
rs31704839
MGI SNP Detail
Alliance Variant		 ChrX:65694555 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1555 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs33843067
MGI SNP Detail
Alliance Variant		 ChrX:65694586 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1586 bp downstream
 SNP A/G G G G G G G G G G G A G G A G
rs214194456
MGI SNP Detail
Alliance Variant		 ChrX:65694603 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1603 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239293531
MGI SNP Detail
Alliance Variant		 ChrX:65694633 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1633 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs259038655
MGI SNP Detail
Alliance Variant		 ChrX:65694771 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1771 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225682551
MGI SNP Detail
Alliance Variant		 ChrX:65694774 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1774 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs235909980
MGI SNP Detail
Alliance Variant		 ChrX:65694804 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1804 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs255348763
MGI SNP Detail
Alliance Variant		 ChrX:65694807 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1807 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33843066
MGI SNP Detail
Alliance Variant		 ChrX:65694914 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1914 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs238279207
MGI SNP Detail
Alliance Variant		 ChrX:65694951 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1951 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs33843065
MGI SNP Detail
Alliance Variant		 ChrX:65694967 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1967 bp downstream
 SNP C/T C C C C C C C C C C C C T C
rs223276009
MGI SNP Detail
Alliance Variant		 ChrX:65694986 Slitrk2 Intron
Slitrk2 mRNA-UTR
Tssr161127 1986 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
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Showing SNP(s) 1 - 57 of 57
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Send questions and comments to User Support. 		last database update
03/25/2025
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