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Mouse SNP Summary
Symbol
Name
ID 		Tssr161564
transcription start site region 161564
MGI:6089331

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583619387
MGI SNP Detail		 ChrX:95297193 Tssr161564 1967 bp upstream
Vsig4 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586894897
MGI SNP Detail		 ChrX:95297354 Tssr161564 1806 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A
rs580998228
MGI SNP Detail		 ChrX:95297452 Tssr161564 1708 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs584756316
MGI SNP Detail		 ChrX:95297453 Tssr161564 1707 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs578282837
MGI SNP Detail		 ChrX:95297487 Tssr161564 1673 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580824525
MGI SNP Detail		 ChrX:95297494 Tssr161564 1666 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585118581
MGI SNP Detail		 ChrX:95297564 Tssr161564 1596 bp upstream
Vsig4 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs579341077
MGI SNP Detail		 ChrX:95297633 Tssr161564 1527 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs582731024
MGI SNP Detail		 ChrX:95297637 Tssr161564 1523 bp upstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs585974738
MGI SNP Detail		 ChrX:95297647 Tssr161564 1513 bp upstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236064614
MGI SNP Detail		 ChrX:95297654 Tssr161564 1506 bp upstream
Vsig4 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263306080
MGI SNP Detail		 ChrX:95297687 Tssr161564 1473 bp upstream
Vsig4 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T G T T T T T T T T T T T T
rs224374953
MGI SNP Detail		 ChrX:95297700 Tssr161564 1460 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs235351324
MGI SNP Detail		 ChrX:95297705 Tssr161564 1455 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579112072
MGI SNP Detail		 ChrX:95297787 Rr8044 within coordinates of
Tssr161564 1373 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582176350
MGI SNP Detail		 ChrX:95297878 Tssr161564 1282 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585889830
MGI SNP Detail		 ChrX:95297930 Tssr161564 1230 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579457678
MGI SNP Detail		 ChrX:95298007 Tssr161564 1153 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582026501
MGI SNP Detail		 ChrX:95298015 Tssr161564 1145 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586357066
MGI SNP Detail		 ChrX:95298035 Tssr161564 1125 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222665317
MGI SNP Detail		 ChrX:95298115 Tssr161564 1045 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs583885254
MGI SNP Detail		 ChrX:95298210 Tssr161564 950 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs587211170
MGI SNP Detail		 ChrX:95298218 Tssr161564 942 bp upstream
Vsig4 within coordinates of
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A C A A A A A A A A T A
rs580117647
MGI SNP Detail		 ChrX:95298219 Tssr161564 941 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs583297128
MGI SNP Detail		 ChrX:95298260 Tssr161564 900 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584496168
MGI SNP Detail		 ChrX:95298315 Tssr161564 845 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580715457
MGI SNP Detail		 ChrX:95298330 Tssr161564 830 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584287562
MGI SNP Detail		 ChrX:95298397 Tssr161564 763 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586343470
MGI SNP Detail		 ChrX:95298410 Tssr161564 750 bp upstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581597331
MGI SNP Detail		 ChrX:95298413 Tssr161564 747 bp upstream
Vsig4 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584994010
MGI SNP Detail		 ChrX:95298468 Tssr161564 692 bp upstream
Vsig4 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587044670
MGI SNP Detail		 ChrX:95298528 Tssr161564 632 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582568499
MGI SNP Detail		 ChrX:95298545 Tssr161564 615 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584564672
MGI SNP Detail		 ChrX:95298579 Tssr161564 581 bp upstream
Vsig4 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C C
rs578751246
MGI SNP Detail		 ChrX:95298638 Tssr161564 522 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582340184
MGI SNP Detail		 ChrX:95298641 Tssr161564 519 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585428775
MGI SNP Detail		 ChrX:95298655 Tssr161564 505 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579629896
MGI SNP Detail		 ChrX:95298761 Tssr161564 399 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582658492
MGI SNP Detail		 ChrX:95298789 Tssr161564 371 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs585983979
MGI SNP Detail		 ChrX:95298794 Tssr161564 366 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265588531
MGI SNP Detail		 ChrX:95298821 Tssr161564 339 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A G A A A A A A A G A A G
rs231404294
MGI SNP Detail		 ChrX:95298853 Tssr161564 307 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248580002
MGI SNP Detail		 ChrX:95298858 Tssr161564 302 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260342077
MGI SNP Detail		 ChrX:95298862 Tssr161564 298 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224688647
MGI SNP Detail		 ChrX:95298863 Tssr161564 297 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33902347
MGI SNP Detail		 ChrX:95298886 Tssr161564 274 bp upstream
Vsig4 within coordinates of
 SNP A/T T T T T T A T T T T T
rs214718516
MGI SNP Detail		 ChrX:95298999 Tssr161564 161 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238099442
MGI SNP Detail		 ChrX:95299302 Tssr161564 131 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252987792
MGI SNP Detail		 ChrX:95299508 Tssr161564 337 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs216032503
MGI SNP Detail		 ChrX:95299592 Tssr161564 421 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235322716
MGI SNP Detail		 ChrX:95299713 Tssr161564 542 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs252765986
MGI SNP Detail		 ChrX:95299743 Tssr161564 572 bp downstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs218848057
MGI SNP Detail		 ChrX:95299776 Tssr161564 605 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs230050495
MGI SNP Detail		 ChrX:95299877 Tssr161564 706 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262514701
MGI SNP Detail		 ChrX:95299951 Tssr161564 780 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222921996
MGI SNP Detail		 ChrX:95300109 Tssr161564 938 bp downstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249615425
MGI SNP Detail		 ChrX:95300165 Tssr161564 994 bp downstream
Vsig4 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258870287
MGI SNP Detail		 ChrX:95300170 Tssr161564 999 bp downstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G C G G G G G G C G G G G
rs223721200
MGI SNP Detail		 ChrX:95300464 Tssr161564 1293 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242526596
MGI SNP Detail		 ChrX:95300517 Tssr161564 1346 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580050016
MGI SNP Detail		 ChrX:95300683 Tssr161564 1512 bp downstream
Vsig4 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260429131
MGI SNP Detail		 ChrX:95300817 Tssr161564 1646 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224795423
MGI SNP Detail		 ChrX:95300873 Tssr161564 1702 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240805236
MGI SNP Detail		 ChrX:95300878 Tssr161564 1707 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs265198775
MGI SNP Detail		 ChrX:95300941 Tssr161564 1770 bp downstream
Vsig4 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229850786
MGI SNP Detail		 ChrX:95301020 Tssr161564 1849 bp downstream
Vsig4 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258241476
MGI SNP Detail		 ChrX:95301068 Tssr161564 1897 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215496237
MGI SNP Detail		 ChrX:95301101 Tssr161564 1930 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs229102141
MGI SNP Detail		 ChrX:95301105 Tssr161564 1934 bp downstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246621328
MGI SNP Detail		 ChrX:95301120 Tssr161564 1949 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213063932
MGI SNP Detail		 ChrX:95301138 Tssr161564 1967 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T C T T T T T C T T T T
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Showing SNP(s) 1 - 71 of 71
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory