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Mouse SNP Summary
Symbol
Name
ID 		Tssr161565
transcription start site region 161565
MGI:6089332

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583619387
MGI SNP Detail		 ChrX:95297193 Tssr161565 1984 bp upstream
Vsig4 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586894897
MGI SNP Detail		 ChrX:95297354 Tssr161565 1823 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A
rs580998228
MGI SNP Detail		 ChrX:95297452 Tssr161565 1725 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs584756316
MGI SNP Detail		 ChrX:95297453 Tssr161565 1724 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs578282837
MGI SNP Detail		 ChrX:95297487 Tssr161565 1690 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580824525
MGI SNP Detail		 ChrX:95297494 Tssr161565 1683 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585118581
MGI SNP Detail		 ChrX:95297564 Tssr161565 1613 bp upstream
Vsig4 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs579341077
MGI SNP Detail		 ChrX:95297633 Tssr161565 1544 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs582731024
MGI SNP Detail		 ChrX:95297637 Tssr161565 1540 bp upstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs585974738
MGI SNP Detail		 ChrX:95297647 Tssr161565 1530 bp upstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236064614
MGI SNP Detail		 ChrX:95297654 Tssr161565 1523 bp upstream
Vsig4 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263306080
MGI SNP Detail		 ChrX:95297687 Tssr161565 1490 bp upstream
Vsig4 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T G T T T T T T T T T T T T
rs224374953
MGI SNP Detail		 ChrX:95297700 Tssr161565 1477 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs235351324
MGI SNP Detail		 ChrX:95297705 Tssr161565 1472 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579112072
MGI SNP Detail		 ChrX:95297787 Rr8044 within coordinates of
Tssr161565 1390 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582176350
MGI SNP Detail		 ChrX:95297878 Tssr161565 1299 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585889830
MGI SNP Detail		 ChrX:95297930 Tssr161565 1247 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579457678
MGI SNP Detail		 ChrX:95298007 Tssr161565 1170 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582026501
MGI SNP Detail		 ChrX:95298015 Tssr161565 1162 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586357066
MGI SNP Detail		 ChrX:95298035 Tssr161565 1142 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222665317
MGI SNP Detail		 ChrX:95298115 Tssr161565 1062 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs583885254
MGI SNP Detail		 ChrX:95298210 Tssr161565 967 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs587211170
MGI SNP Detail		 ChrX:95298218 Tssr161565 959 bp upstream
Vsig4 within coordinates of
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A C A A A A A A A A T A
rs580117647
MGI SNP Detail		 ChrX:95298219 Tssr161565 958 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs583297128
MGI SNP Detail		 ChrX:95298260 Tssr161565 917 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584496168
MGI SNP Detail		 ChrX:95298315 Tssr161565 862 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580715457
MGI SNP Detail		 ChrX:95298330 Tssr161565 847 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584287562
MGI SNP Detail		 ChrX:95298397 Tssr161565 780 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586343470
MGI SNP Detail		 ChrX:95298410 Tssr161565 767 bp upstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581597331
MGI SNP Detail		 ChrX:95298413 Tssr161565 764 bp upstream
Vsig4 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584994010
MGI SNP Detail		 ChrX:95298468 Tssr161565 709 bp upstream
Vsig4 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587044670
MGI SNP Detail		 ChrX:95298528 Tssr161565 649 bp upstream
Vsig4 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582568499
MGI SNP Detail		 ChrX:95298545 Tssr161565 632 bp upstream
Vsig4 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584564672
MGI SNP Detail		 ChrX:95298579 Tssr161565 598 bp upstream
Vsig4 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C C
rs578751246
MGI SNP Detail		 ChrX:95298638 Tssr161565 539 bp upstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582340184
MGI SNP Detail		 ChrX:95298641 Tssr161565 536 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585428775
MGI SNP Detail		 ChrX:95298655 Tssr161565 522 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579629896
MGI SNP Detail		 ChrX:95298761 Tssr161565 416 bp upstream
Vsig4 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582658492
MGI SNP Detail		 ChrX:95298789 Tssr161565 388 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs585983979
MGI SNP Detail		 ChrX:95298794 Tssr161565 383 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265588531
MGI SNP Detail		 ChrX:95298821 Tssr161565 356 bp upstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A G A A A A A A A G A A G
rs231404294
MGI SNP Detail		 ChrX:95298853 Tssr161565 324 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248580002
MGI SNP Detail		 ChrX:95298858 Tssr161565 319 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260342077
MGI SNP Detail		 ChrX:95298862 Tssr161565 315 bp upstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224688647
MGI SNP Detail		 ChrX:95298863 Tssr161565 314 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33902347
MGI SNP Detail		 ChrX:95298886 Tssr161565 291 bp upstream
Vsig4 within coordinates of
 SNP A/T T T T T T A T T T T T
rs214718516
MGI SNP Detail		 ChrX:95298999 Tssr161565 178 bp upstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238099442
MGI SNP Detail		 ChrX:95299302 Tssr161565 95 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252987792
MGI SNP Detail		 ChrX:95299508 Tssr161565 301 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs216032503
MGI SNP Detail		 ChrX:95299592 Tssr161565 385 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235322716
MGI SNP Detail		 ChrX:95299713 Tssr161565 506 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs252765986
MGI SNP Detail		 ChrX:95299743 Tssr161565 536 bp downstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs218848057
MGI SNP Detail		 ChrX:95299776 Tssr161565 569 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs230050495
MGI SNP Detail		 ChrX:95299877 Tssr161565 670 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262514701
MGI SNP Detail		 ChrX:95299951 Tssr161565 744 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222921996
MGI SNP Detail		 ChrX:95300109 Tssr161565 902 bp downstream
Vsig4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249615425
MGI SNP Detail		 ChrX:95300165 Tssr161565 958 bp downstream
Vsig4 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258870287
MGI SNP Detail		 ChrX:95300170 Tssr161565 963 bp downstream
Vsig4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G C G G G G G G C G G G G
rs223721200
MGI SNP Detail		 ChrX:95300464 Tssr161565 1257 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242526596
MGI SNP Detail		 ChrX:95300517 Tssr161565 1310 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580050016
MGI SNP Detail		 ChrX:95300683 Tssr161565 1476 bp downstream
Vsig4 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260429131
MGI SNP Detail		 ChrX:95300817 Tssr161565 1610 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224795423
MGI SNP Detail		 ChrX:95300873 Tssr161565 1666 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240805236
MGI SNP Detail		 ChrX:95300878 Tssr161565 1671 bp downstream
Vsig4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs265198775
MGI SNP Detail		 ChrX:95300941 Tssr161565 1734 bp downstream
Vsig4 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229850786
MGI SNP Detail		 ChrX:95301020 Tssr161565 1813 bp downstream
Vsig4 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258241476
MGI SNP Detail		 ChrX:95301068 Tssr161565 1861 bp downstream
Vsig4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215496237
MGI SNP Detail		 ChrX:95301101 Tssr161565 1894 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs229102141
MGI SNP Detail		 ChrX:95301105 Tssr161565 1898 bp downstream
Vsig4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246621328
MGI SNP Detail		 ChrX:95301120 Tssr161565 1913 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213063932
MGI SNP Detail		 ChrX:95301138 Tssr161565 1931 bp downstream
Vsig4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T C T T T T T C T T T T
rs230193431
MGI SNP Detail		 ChrX:95301178 Tssr161565 1971 bp downstream
Vsig4 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T A T T T T T T T T T
rs257885888
MGI SNP Detail		 ChrX:95301180 Tssr161565 1973 bp downstream
Vsig4 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory