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Mouse SNP Summary
Symbol
Name
ID
Tssr161700
transcription start site region 161700
MGI:6089467

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252517021
MGI SNP Detail
ChrX:100737444 Tssr161700 1995 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217062176
MGI SNP Detail
ChrX:100737661 Tssr161700 1778 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235349349
MGI SNP Detail
ChrX:100737668 Tssr161700 1771 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250251458
MGI SNP Detail
ChrX:100737765 Tssr161700 1674 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217943384
MGI SNP Detail
ChrX:100737810 Tssr161700 1629 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T C T T T T T T T C T T T
rs244015063
MGI SNP Detail
ChrX:100737952 Tssr161700 1487 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261933197
MGI SNP Detail
ChrX:100737987 Tssr161700 1452 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs224973036
MGI SNP Detail
ChrX:100738039 Tssr161700 1400 bp upstream
SNP A/C A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs247724875
MGI SNP Detail
ChrX:100738144 Tssr161700 1295 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257331103
MGI SNP Detail
ChrX:100738181 Tssr161700 1258 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs222724031
MGI SNP Detail
ChrX:100738269 Tssr161700 1170 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240907372
MGI SNP Detail
ChrX:100738320 Tssr161700 1119 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254812684
MGI SNP Detail
ChrX:100738350 Tssr161700 1089 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579060708
MGI SNP Detail
ChrX:100738413 Tssr161700 1026 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582301412
MGI SNP Detail
ChrX:100738539 Tssr161700 900 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G T G G G G G G G T G G G G
rs228422084
MGI SNP Detail
ChrX:100738551 Tssr161700 888 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251796488
MGI SNP Detail
ChrX:100738556 Tssr161700 883 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265134949
MGI SNP Detail
ChrX:100738685 Tssr161700 754 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29082192
MGI SNP Detail
ChrX:100738701 Tssr161700 738 bp upstream
SNP G/T T T T T T T T T T T G T T G T
rs246820258
MGI SNP Detail
ChrX:100738802 Tssr161700 637 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs217776048
MGI SNP Detail
ChrX:100738816 Tssr161700 623 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G
rs235298369
MGI SNP Detail
ChrX:100739215 Gm50476 within coordinates of
Tssr161700 224 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs243959222
MGI SNP Detail
ChrX:100739260 Gm50476 within coordinates of
Tssr161700 179 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211865781
MGI SNP Detail
ChrX:100739294 Gm50476 within coordinates of
Tssr161700 145 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238788198
MGI SNP Detail
ChrX:100739430 Gm50476 within coordinates of
Tssr161700 9 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256976601
MGI SNP Detail
ChrX:100739473 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 26 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C T C C C C C C C C C C C C
rs224990471
MGI SNP Detail
ChrX:100739476 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 29 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs237860584
MGI SNP Detail
ChrX:100739490 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 43 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
rs253208117
MGI SNP Detail
ChrX:100739632 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 185 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs221930840
MGI SNP Detail
ChrX:100739645 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 198 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs240931921
MGI SNP Detail
ChrX:100739653 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 206 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs254669584
MGI SNP Detail
ChrX:100739711 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 264 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs220668495
MGI SNP Detail
ChrX:100739717 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 270 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G
rs247023355
MGI SNP Detail
ChrX:100739743 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 296 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262515409
MGI SNP Detail
ChrX:100739748 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 301 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584716688
MGI SNP Detail
ChrX:100739787 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 340 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T T T T T T T T T T T
rs584304230
MGI SNP Detail
ChrX:100739795 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 348 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579406263
MGI SNP Detail
ChrX:100739959 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 512 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582847033
MGI SNP Detail
ChrX:100740282 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 835 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585889191
MGI SNP Detail
ChrX:100740293 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 846 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580241140
MGI SNP Detail
ChrX:100740366 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 919 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233496721
MGI SNP Detail
ChrX:100740439 Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 992 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs246761629
MGI SNP Detail
ChrX:100740467 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1020 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs583702742
MGI SNP Detail
ChrX:100740498 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1051 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261586269
MGI SNP Detail
ChrX:100740553 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1106 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228833568
MGI SNP Detail
ChrX:100740601 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1154 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C A C C C C C C C C C C A C C C C C C C C C C C
rs243992934
MGI SNP Detail
ChrX:100740629 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1182 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C A C C C
rs211716977
MGI SNP Detail
ChrX:100740686 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1239 bp downstream
SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs236777689
MGI SNP Detail
ChrX:100740703 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1256 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C T C C C C C C C C C C C
rs579898800
MGI SNP Detail
ChrX:100740770 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1323 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583306480
MGI SNP Detail
ChrX:100740837 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1390 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586821130
MGI SNP Detail
ChrX:100740851 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1404 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580556351
MGI SNP Detail
ChrX:100740867 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1420 bp downstream
SNP T T T T T T T T T T T T T T T
rs585239183
MGI SNP Detail
ChrX:100740914 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1467 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs587037687
MGI SNP Detail
ChrX:100740915 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1468 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G
rs254906915
MGI SNP Detail
ChrX:100740939 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1492 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216411440
MGI SNP Detail
ChrX:100741035 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1588 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232780250
MGI SNP Detail
ChrX:100741060 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1613 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A C A A A A A A A A A A A
rs253071613
MGI SNP Detail
ChrX:100741067 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1620 bp downstream
SNP A/G A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A G A A A A A A G A A A
rs216669879
MGI SNP Detail
ChrX:100741077 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1630 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A G A A A A A A A A A G A A A A A A A A A A A
rs581439378
MGI SNP Detail
ChrX:100741193 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1746 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584900247
MGI SNP Detail
ChrX:100741220 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1773 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230658790
MGI SNP Detail
ChrX:100741252 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1805 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G C G G C G G G G G G G G G G G G G G C G G G G G G G G G G G
rs256359185
MGI SNP Detail
ChrX:100741258 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1811 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C A C C C C C C C C C C C
rs582298009
MGI SNP Detail
ChrX:100741259 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1812 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G C G G G G G G G G G G G
rs584554457
MGI SNP Detail
ChrX:100741293 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1846 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578471321
MGI SNP Detail
ChrX:100741294 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1847 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579346072
MGI SNP Detail
ChrX:100741324 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1877 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586427301
MGI SNP Detail
ChrX:100741341 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1894 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220144675
MGI SNP Detail
ChrX:100741383 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1936 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs580379514
MGI SNP Detail
ChrX:100741387 Cpgi22873 within coordinates of
Gcna within coordinates of
Gm50476 within coordinates of
Tssr161700 1940 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 71 of 71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory