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Mouse SNP Summary
Symbol
Name
ID
Tssr162226
transcription start site region 162226
MGI:6089993

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Showing SNP(s) 1 - 60 of 60

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29288659
MGI SNP Detail
ChrX:140256407 Col4a6 within coordinates of
Tssr162226 1974 bp upstream
SNP C/G G G G G G G C G G G C G G C C
rs29288658
MGI SNP Detail
ChrX:140256413 Col4a6 within coordinates of
Tssr162226 1968 bp upstream
SNP C/T C C C C C C T C C C C C
rs29288657
MGI SNP Detail
ChrX:140256465 Col4a6 within coordinates of
Tssr162226 1916 bp upstream
SNP G/T T T T T T T T T T T G T T G T
rs29288656
MGI SNP Detail
ChrX:140256491 Col4a6 within coordinates of
Tssr162226 1890 bp upstream
SNP C/T C C C C C T C C C C C C C C
rs251920942
MGI SNP Detail
ChrX:140256551 Col4a6 within coordinates of
Tssr162226 1830 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219390190
MGI SNP Detail
ChrX:140256560 Col4a6 within coordinates of
Tssr162226 1821 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs246679111
MGI SNP Detail
ChrX:140256702 Col4a6 within coordinates of
Tssr162226 1679 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255385450
MGI SNP Detail
ChrX:140256738 Col4a6 within coordinates of
Tssr162226 1643 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs220288705
MGI SNP Detail
ChrX:140256927 Col4a6 within coordinates of
Tssr162226 1454 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242408886
MGI SNP Detail
ChrX:140256933 Col4a6 within coordinates of
Tssr162226 1448 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260803475
MGI SNP Detail
ChrX:140256946 Col4a6 within coordinates of
Tssr162226 1435 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29288655
MGI SNP Detail
ChrX:140256966 Col4a6 within coordinates of
Tssr162226 1415 bp upstream
SNP A/G A A A A A A A A A A A A A G A
rs29288654
MGI SNP Detail
ChrX:140257058 Col4a6 within coordinates of
Tssr162226 1323 bp upstream
Tssr164270 within coordinates of
SNP A/C A A A A A A C A A A C A A C C
rs33850721
MGI SNP Detail
ChrX:140257141 Tssr162226 1240 bp upstream
SNP C/T C C C C C C T C C C C C C C C
rs260281889
MGI SNP Detail
ChrX:140257163 Tssr162226 1218 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230497786
MGI SNP Detail
ChrX:140257228 Tssr162226 1153 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256542220
MGI SNP Detail
ChrX:140257241 Tssr162226 1140 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212313044
MGI SNP Detail
ChrX:140257425 Tssr162226 956 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs33850720
MGI SNP Detail
ChrX:140257492 Tssr162226 889 bp upstream
SNP A/G G G G G G G A G G G G G G G G
rs33850719
MGI SNP Detail
ChrX:140257596 Tssr162226 785 bp upstream
SNP C/T C C C C C C T C C C C C T C
rs217197001
MGI SNP Detail
ChrX:140257624 Tssr162226 757 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33850718
MGI SNP Detail
ChrX:140257721 Tssr162226 660 bp upstream
SNP A/T A A A A A A T A A A T A A T A
rs33850717
MGI SNP Detail
ChrX:140258044 Rr694032 within coordinates of
Tssr162226 337 bp upstream
SNP A/C C C C C C A C C C C C C C
rs213574228
MGI SNP Detail
ChrX:140258058 Rr694032 within coordinates of
Tssr162226 323 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs236994134
MGI SNP Detail
ChrX:140258220 Rr694032 within coordinates of
Tssr162226 161 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260759288
MGI SNP Detail
ChrX:140258259 Rr694032 within coordinates of
Tssr162226 122 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221305297
MGI SNP Detail
ChrX:140258261 Rr694032 within coordinates of
Tssr162226 120 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33850716
MGI SNP Detail
ChrX:140258327 Rr694032 within coordinates of
Tssr162226 54 bp upstream
SNP C/G G G G G G G C G G G G G G G G
rs254596654
MGI SNP Detail
ChrX:140258406 Col4a5 within coordinates of
Rr694032 within coordinates of
Tssr162226 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs240557422
MGI SNP Detail
ChrX:140258586 Col4a5 within coordinates of
Tssr162226 122 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259999083
MGI SNP Detail
ChrX:140258643 Col4a5 within coordinates of
Tssr162226 179 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222589801
MGI SNP Detail
ChrX:140258827 Col4a5 within coordinates of
Tssr162226 363 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs13484038
MGI SNP Detail
ChrX:140258843 Col4a5 within coordinates of
Tssr162226 379 bp downstream
SNP A/G G A A G A G A G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G A G G G G G G
rs264759202
MGI SNP Detail
ChrX:140258931 Col4a5 within coordinates of
Tssr162226 467 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229154536
MGI SNP Detail
ChrX:140259174 Col4a5 within coordinates of
Tssr162226 710 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T
rs33850715
MGI SNP Detail
ChrX:140259259 Col4a5 within coordinates of
Tssr162226 795 bp downstream
SNP C/T T T T T T T T T T T T T C T
rs259597731
MGI SNP Detail
ChrX:140259452 Col4a5 within coordinates of
Tssr162226 988 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226635347
MGI SNP Detail
ChrX:140259542 Col4a5 within coordinates of
Tssr162226 1078 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245663179
MGI SNP Detail
ChrX:140259588 Col4a5 within coordinates of
Tssr162226 1124 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213376989
MGI SNP Detail
ChrX:140259640 Col4a5 within coordinates of
Tssr162226 1176 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33850714
MGI SNP Detail
ChrX:140259646 Col4a5 within coordinates of
Tssr162226 1182 bp downstream
SNP C/T C C C C C C T C C C T C C T C
rs33850463
MGI SNP Detail
ChrX:140259662 Col4a5 within coordinates of
Tssr162226 1198 bp downstream
SNP A/G A A A A A A G A A A A A G A
rs33850462
MGI SNP Detail
ChrX:140259751 Col4a5 within coordinates of
Tssr162226 1287 bp downstream
SNP A/C C C C C C C C C C C C C C A C
rs33850461
MGI SNP Detail
ChrX:140259753 Col4a5 within coordinates of
Tssr162226 1289 bp downstream
SNP C/G G G G G G G C G G G G G G G
rs33850460
MGI SNP Detail
ChrX:140259890 Col4a5 within coordinates of
Tssr162226 1426 bp downstream
SNP C/T C C C C C C C C C C C C C T C
rs33850459
MGI SNP Detail
ChrX:140259914 Col4a5 within coordinates of
Tssr162226 1450 bp downstream
SNP G/T T T T T T T G T T T G T T T T
rs581630499
MGI SNP Detail
ChrX:140259951 Col4a5 within coordinates of
Tssr162226 1487 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33850458
MGI SNP Detail
ChrX:140259989 Col4a5 within coordinates of
Tssr162226 1525 bp downstream
SNP A/G G G G G G G G G G G G G G A G
rs33850457
MGI SNP Detail
ChrX:140260036 Col4a5 within coordinates of
Tssr162226 1572 bp downstream
SNP G/T T T T T T G T T T G T T G T
rs222626715
MGI SNP Detail
ChrX:140260111 Col4a5 within coordinates of
Tssr162226 1647 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246991474
MGI SNP Detail
ChrX:140260129 Col4a5 within coordinates of
Tssr162226 1665 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs261726597
MGI SNP Detail
ChrX:140260148 Col4a5 within coordinates of
Tssr162226 1684 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
rs583162424
MGI SNP Detail
ChrX:140260182 Col4a5 within coordinates of
Tssr162226 1718 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586535201
MGI SNP Detail
ChrX:140260192 Col4a5 within coordinates of
Tssr162226 1728 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221570802
MGI SNP Detail
ChrX:140260216 Col4a5 within coordinates of
Tssr162226 1752 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241043965
MGI SNP Detail
ChrX:140260217 Col4a5 within coordinates of
Tssr162226 1753 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33850456
MGI SNP Detail
ChrX:140260277 Col4a5 within coordinates of
Tssr162226 1813 bp downstream
SNP A/G A A A A A A G A A A A A G A
rs33850455
MGI SNP Detail
ChrX:140260300 Col4a5 within coordinates of
Tssr162226 1836 bp downstream
SNP A/T T T T T T T A T T T T T A T
rs33850454
MGI SNP Detail
ChrX:140260354 Col4a5 within coordinates of
Tssr162226 1890 bp downstream
SNP A/G A A A A A A G A A A G A A A A
rs265019860
MGI SNP Detail
ChrX:140260446 Col4a5 within coordinates of
Tssr162226 1982 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T G T T T T G T T T T
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Showing SNP(s) 1 - 60 of 60

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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