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Mouse SNP Summary
Symbol
Name
ID 		Tssr162278
transcription start site region 162278
MGI:6090045

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Showing SNP(s) 1 - 65 of 65

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229330442
MGI SNP Detail		 ChrX:143116793 Alg13 within coordinates of
Tssr162278 1990 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs245225320
MGI SNP Detail		 ChrX:143116837 Alg13 within coordinates of
Tssr162278 1946 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs215949673
MGI SNP Detail		 ChrX:143116872 Alg13 within coordinates of
Tssr162278 1911 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230049262
MGI SNP Detail		 ChrX:143116906 Alg13 within coordinates of
Tssr162278 1877 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29281992
MGI SNP Detail		 ChrX:143116979 Alg13 within coordinates of
Tssr162278 1804 bp upstream
 SNP A/C C C C C C C C C C C A C C A C
rs211870281
MGI SNP Detail		 ChrX:143117034 Alg13 within coordinates of
Tssr162278 1749 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235283632
MGI SNP Detail		 ChrX:143117134 Alg13 within coordinates of
Tssr162278 1649 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs254172359
MGI SNP Detail		 ChrX:143117153 Alg13 within coordinates of
Tssr162278 1630 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T C T T T T C T T T T
rs217078833
MGI SNP Detail		 ChrX:143117242 Alg13 within coordinates of
Tssr162278 1541 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582917631
MGI SNP Detail		 ChrX:143117261 Alg13 within coordinates of
Tssr162278 1522 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233535573
MGI SNP Detail		 ChrX:143117366 Alg13 within coordinates of
Tssr162278 1417 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29281991
MGI SNP Detail		 ChrX:143117392 Alg13 within coordinates of
Tssr162278 1391 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs29281990
MGI SNP Detail		 ChrX:143117459 Alg13 within coordinates of
Tssr162278 1324 bp upstream
 SNP C/T T T T T T T C T T T T T T T T
rs586057201
MGI SNP Detail		 ChrX:143117497 Alg13 within coordinates of
Tssr162278 1286 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246228672
MGI SNP Detail		 ChrX:143117631 Alg13 within coordinates of
Tssr162278 1152 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs29281989
MGI SNP Detail		 ChrX:143117658 Alg13 within coordinates of
Tssr162278 1125 bp upstream
 SNP A/C C C C C C C A C C C A C C A C
rs220283328
MGI SNP Detail		 ChrX:143117715 Alg13 within coordinates of
Tssr162278 1068 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G T G
rs242374024
MGI SNP Detail		 ChrX:143117751 Alg13 within coordinates of
Tssr162278 1032 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs580204872
MGI SNP Detail		 ChrX:143117769 Alg13 within coordinates of
Tssr162278 1014 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T C T T T T T T T T T T T T
rs583063540
MGI SNP Detail		 ChrX:143117770 Alg13 within coordinates of
Tssr162278 1013 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs586912340
MGI SNP Detail		 ChrX:143117771 Alg13 within coordinates of
Tssr162278 1012 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs259258379
MGI SNP Detail		 ChrX:143117788 Alg13 within coordinates of
Tssr162278 995 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C G C C C C C C C C C C C C
rs229299071
MGI SNP Detail		 ChrX:143117873 Alg13 within coordinates of
Tssr162278 910 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256086026
MGI SNP Detail		 ChrX:143118083 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 700 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T C T T T T
rs29281988
MGI SNP Detail		 ChrX:143118300 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 483 bp upstream
 SNP C/G C C C C C C G C C C G C C G C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579903823
MGI SNP Detail		 ChrX:143118309 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 474 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29281987
MGI SNP Detail		 ChrX:143118343 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 440 bp upstream
 SNP A/C A A A A A A A A A A C A A A A
rs247781719
MGI SNP Detail		 ChrX:143118389 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 394 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217241422
MGI SNP Detail		 ChrX:143118497 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 286 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233406235
MGI SNP Detail		 ChrX:143118579 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 204 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29281986
MGI SNP Detail		 ChrX:143118661 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 122 bp upstream
 SNP G/T T T T T T T T T T T T T T G T
rs217571685
MGI SNP Detail		 ChrX:143118710 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 73 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs236576927
MGI SNP Detail		 ChrX:143118712 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 71 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs262680847
MGI SNP Detail		 ChrX:143118723 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 60 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs220761805
MGI SNP Detail		 ChrX:143118771 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 12 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A
rs245407923
MGI SNP Detail		 ChrX:143118834 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 7 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29281985
MGI SNP Detail		 ChrX:143118839 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 12 bp downstream
 SNP A/T T T T T T T A T T T A T T A A
rs222886866
MGI SNP Detail		 ChrX:143118859 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 32 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs239276170
MGI SNP Detail		 ChrX:143118898 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 71 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs258198125
MGI SNP Detail		 ChrX:143118940 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 113 bp downstream
Tssr162280 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230338519
MGI SNP Detail		 ChrX:143118946 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 119 bp downstream
Tssr162280 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29281984
MGI SNP Detail		 ChrX:143119090 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 263 bp downstream
 SNP A/G G G G G G G G G G G A G G G G
rs244068816
MGI SNP Detail		 ChrX:143119126 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 299 bp downstream
Tssr162286 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264657373
MGI SNP Detail		 ChrX:143119348 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 521 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs29281473
MGI SNP Detail		 ChrX:143119471 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 644 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs247884434
MGI SNP Detail		 ChrX:143119551 Alg13 within coordinates of
Rr395738 within coordinates of
Tssr162278 724 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29281472
MGI SNP Detail		 ChrX:143119596 Alg13 within coordinates of
Tssr162278 769 bp downstream
 SNP A/G G G G G G G A G G G A G G A G
rs227151300
MGI SNP Detail		 ChrX:143119633 Alg13 within coordinates of
Tssr162278 806 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246922256
MGI SNP Detail		 ChrX:143119703 Alg13 within coordinates of
Tssr162278 876 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29281471
MGI SNP Detail		 ChrX:143119750 Alg13 within coordinates of
Tssr162278 923 bp downstream
 SNP C/T T T T T T T C T T T C T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238727037
MGI SNP Detail		 ChrX:143119773 Alg13 within coordinates of
Tssr162278 946 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29281470
MGI SNP Detail		 ChrX:143119881 Alg13 within coordinates of
Tssr162278 1054 bp downstream
 SNP C/T T T T T T T C T T T T T T
rs212781706
MGI SNP Detail		 ChrX:143119889 Alg13 within coordinates of
Tssr162278 1062 bp downstream
 SNP A/C/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A T T A A T A A A A A A A C A T A
rs29281469
MGI SNP Detail		 ChrX:143119900 Alg13 within coordinates of
Tssr162278 1073 bp downstream
 SNP A/C C C C C C C A C C C C C C
rs252821574
MGI SNP Detail		 ChrX:143119939 Alg13 within coordinates of
Tssr162278 1112 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29281468
MGI SNP Detail		 ChrX:143119998 Alg13 within coordinates of
Tssr162278 1171 bp downstream
 SNP C/G G G G G G C G G G G G G G G
rs232995817
MGI SNP Detail		 ChrX:143120040 Alg13 within coordinates of
Tssr162278 1213 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263473866
MGI SNP Detail		 ChrX:143120507 Alg13 within coordinates of
Tssr162278 1680 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222637572
MGI SNP Detail		 ChrX:143120533 Alg13 within coordinates of
Tssr162278 1706 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs247008196
MGI SNP Detail		 ChrX:143120536 Alg13 within coordinates of
Tssr162278 1709 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs261452263
MGI SNP Detail		 ChrX:143120537 Alg13 within coordinates of
Tssr162278 1710 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221044441
MGI SNP Detail		 ChrX:143120544 Alg13 within coordinates of
Tssr162278 1717 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs241856245
MGI SNP Detail		 ChrX:143120591 Alg13 within coordinates of
Tssr162278 1764 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261186919
MGI SNP Detail		 ChrX:143120608 Alg13 within coordinates of
Tssr162278 1781 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227256732
MGI SNP Detail		 ChrX:143120645 Alg13 within coordinates of
Rr395739 within coordinates of
Tssr162278 1818 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 65 of 65
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory