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Mouse SNP Summary
Symbol
Name
ID 		Tssr162420
transcription start site region 162420
MGI:6090187

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214788594
MGI SNP Detail		 ChrX:154043545 Tssr162420 1898 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs235874673
MGI SNP Detail		 ChrX:154043569 Tssr162420 1874 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C
rs253411322
MGI SNP Detail		 ChrX:154043714 Tssr162420 1729 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214916055
MGI SNP Detail		 ChrX:154043820 Tssr162420 1623 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G C G G G G
rs236281306
MGI SNP Detail		 ChrX:154043848 Tssr162420 1595 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs254210980
MGI SNP Detail		 ChrX:154043887 Tssr162420 1556 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs221307893
MGI SNP Detail		 ChrX:154043988 Tssr162420 1455 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs244021182
MGI SNP Detail		 ChrX:154043996 Tssr162420 1447 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs257838777
MGI SNP Detail		 ChrX:154043998 Tssr162420 1445 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs223277758
MGI SNP Detail		 ChrX:154044042 Tssr162420 1401 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs237614912
MGI SNP Detail		 ChrX:154044043 Tssr162420 1400 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs258291613
MGI SNP Detail		 ChrX:154044086 Tssr162420 1357 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G
rs226960770
MGI SNP Detail		 ChrX:154044104 Tssr162420 1339 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31110215
MGI SNP Detail		 ChrX:154044154 Tssr162420 1289 bp upstream
 SNP A/T A T
rs266006536
MGI SNP Detail		 ChrX:154044250 Tssr162420 1193 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs229120862
MGI SNP Detail		 ChrX:154044318 Tssr162420 1125 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs33876156
MGI SNP Detail		 ChrX:154044382 Tssr162420 1061 bp upstream
 SNP A/G A G G A
rs215176865
MGI SNP Detail		 ChrX:154044448 Tssr162420 995 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T
rs33877657
MGI SNP Detail		 ChrX:154044515 Tssr162420 928 bp upstream
 SNP G/T G T T G G
rs246927906
MGI SNP Detail		 ChrX:154044666 Rr395811 within coordinates of
Tssr162420 777 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs214981196
MGI SNP Detail		 ChrX:154044697 Rr395811 within coordinates of
Tssr162420 746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs236191311
MGI SNP Detail		 ChrX:154044712 Rr395811 within coordinates of
Tssr162420 731 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs254122003
MGI SNP Detail		 ChrX:154044713 Rr395811 within coordinates of
Tssr162420 730 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs213158890
MGI SNP Detail		 ChrX:154044720 Rr395811 within coordinates of
Tssr162420 723 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234542359
MGI SNP Detail		 ChrX:154044746 Rr395811 within coordinates of
Tssr162420 697 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262443013
MGI SNP Detail		 ChrX:154044749 Rr395811 within coordinates of
Tssr162420 694 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222505863
MGI SNP Detail		 ChrX:154044751 Rr395811 within coordinates of
Tssr162420 692 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs237675870
MGI SNP Detail		 ChrX:154044766 Rr395811 within coordinates of
Tssr162420 677 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C A C C C C C C C A C C C C
rs251975874
MGI SNP Detail		 ChrX:154044776 Rr395811 within coordinates of
Tssr162420 667 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A T A A A A A A A T A A A A
rs220807755
MGI SNP Detail		 ChrX:154044847 Rr395811 within coordinates of
Tssr162420 596 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G T G G G G G G G T G G G
rs241755953
MGI SNP Detail		 ChrX:154044942 Rr395811 within coordinates of
Tssr162420 501 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs264107684
MGI SNP Detail		 ChrX:154045036 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 407 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs578815367
MGI SNP Detail		 ChrX:154045207 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 236 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs582201539
MGI SNP Detail		 ChrX:154045211 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 232 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29301975
MGI SNP Detail		 ChrX:154045245 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 198 bp upstream
 SNP A/T A T A
rs241488980
MGI SNP Detail		 ChrX:154045305 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 138 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs265396352
MGI SNP Detail		 ChrX:154045311 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 132 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226116177
MGI SNP Detail		 ChrX:154045340 Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 103 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs247599160
MGI SNP Detail		 ChrX:154045373 Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 70 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs214892465
MGI SNP Detail		 ChrX:154045432 Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 11 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228939222
MGI SNP Detail		 ChrX:154045440 Acot9 within coordinates of
Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 3 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259008778
MGI SNP Detail		 ChrX:154045511 Acot9 within coordinates of
Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 57 bp downstream
Tssr162422 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs29301974
MGI SNP Detail		 ChrX:154045559 Acot9 within coordinates of
Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 105 bp downstream
 SNP A/G G A G
rs236070667
MGI SNP Detail		 ChrX:154045714 Acot9 within coordinates of
Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 260 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251358136
MGI SNP Detail		 ChrX:154045729 Acot9 within coordinates of
Cpgi23012 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 275 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213632689
MGI SNP Detail		 ChrX:154045893 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 439 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586179825
MGI SNP Detail		 ChrX:154046003 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 549 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs578947467
MGI SNP Detail		 ChrX:154046004 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 550 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs233581089
MGI SNP Detail		 ChrX:154046045 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 591 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251182874
MGI SNP Detail		 ChrX:154046213 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 759 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220866038
MGI SNP Detail		 ChrX:154046226 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 772 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs235254428
MGI SNP Detail		 ChrX:154046238 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 784 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A
rs263853289
MGI SNP Detail		 ChrX:154046240 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 786 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs221770542
MGI SNP Detail		 ChrX:154046288 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 834 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244384452
MGI SNP Detail		 ChrX:154046362 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 908 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262930111
MGI SNP Detail		 ChrX:154046387 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 933 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219782602
MGI SNP Detail		 ChrX:154046543 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 1089 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs241656550
MGI SNP Detail		 ChrX:154046554 Acot9 within coordinates of
Rr395811 within coordinates of
Rr8395 within coordinates of
Tssr162420 1100 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259486143
MGI SNP Detail		 ChrX:154046618 Acot9 within coordinates of
Rr395811 within coordinates of
Tssr162420 1164 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs228949675
MGI SNP Detail		 ChrX:154046623 Acot9 within coordinates of
Rr395811 within coordinates of
Tssr162420 1169 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253579859
MGI SNP Detail		 ChrX:154046667 Acot9 within coordinates of
Rr395811 within coordinates of
Tssr162420 1213 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264808121
MGI SNP Detail		 ChrX:154046677 Acot9 within coordinates of
Rr395811 within coordinates of
Tssr162420 1223 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T
rs29301553
MGI SNP Detail		 ChrX:154046830 Acot9 within coordinates of
Tssr162420 1376 bp downstream
 SNP A/G G A G G
rs227373148
MGI SNP Detail		 ChrX:154046952 Acot9 within coordinates of
Tssr162420 1498 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs582347304
MGI SNP Detail		 ChrX:154046970 Acot9 within coordinates of
Tssr162420 1516 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G
rs255978902
MGI SNP Detail		 ChrX:154047192 Acot9 within coordinates of
Tssr162420 1738 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs213553945
MGI SNP Detail		 ChrX:154047300 Acot9 within coordinates of
Tssr162420 1846 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 67 of 67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory