About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr163080
transcription start site region 163080
MGI:6090847

<< first < prev1 next > last >>
Showing SNP(s) 1 - 39 of 39

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
SNP Density Heatmap
ChrX from 20,725,415 bp to 20,729,437 bp
(4,023 bp)
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250103938
MGI SNP Detail
Alliance Variant
ChrX:20725488 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1927 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A
rs216843904
MGI SNP Detail
Alliance Variant
ChrX:20725584 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1831 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235325614
MGI SNP Detail
Alliance Variant
ChrX:20725668 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1747 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253081522
MGI SNP Detail
Alliance Variant
ChrX:20725735 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1680 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220602963
MGI SNP Detail
Alliance Variant
ChrX:20725784 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1631 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238705292
MGI SNP Detail
Alliance Variant
ChrX:20725858 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1557 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs261990548
MGI SNP Detail
Alliance Variant
ChrX:20725894 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1521 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs223063783
MGI SNP Detail
Alliance Variant
ChrX:20726077 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1338 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243636598
MGI SNP Detail
Alliance Variant
ChrX:20726150 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1265 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261769196
MGI SNP Detail
Alliance Variant
ChrX:20726167 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1248 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222452250
MGI SNP Detail
Alliance Variant
ChrX:20726192 Araf Intron
Araf Noncoding-Transcript-Variant
Tssr163080 1223 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242516583
MGI SNP Detail
Alliance Variant
ChrX:20726292 Araf Coding-Synonymous
Araf mRNA-UTR
Araf Noncoding-Transcript-Variant
Tssr163080 1123 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259431954
MGI SNP Detail
Alliance Variant
ChrX:20726389 Araf mRNA-UTR
Araf Noncoding-Transcript-Variant
Tssr163080 1026 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228250191
MGI SNP Detail
Alliance Variant
ChrX:20726462 Araf mRNA-UTR
Araf Noncoding-Transcript-Variant
Tssr163080 953 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251098989
MGI SNP Detail
Alliance Variant
ChrX:20726622 Araf mRNA-UTR
Araf Noncoding-Transcript-Variant
Tssr163080 793 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs265385300
MGI SNP Detail
Alliance Variant
ChrX:20726678 Araf mRNA-UTR
Araf Noncoding-Transcript-Variant
Tssr163080 737 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228090179
MGI SNP Detail
Alliance Variant
ChrX:20726844 Syn1 mRNA-UTR
Tssr163080 571 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs29688749
MGI SNP Detail
Alliance Variant
ChrX:20727133 Syn1 mRNA-UTR
Tssr163080 282 bp downstream
SNP A/G A A A A A A G G A
rs216695059
MGI SNP Detail
Alliance Variant
ChrX:20727195 Syn1 mRNA-UTR
Tssr163080 220 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229388684
MGI SNP Detail
Alliance Variant
ChrX:20727354 Syn1 mRNA-UTR
Tssr163078 within coordinates of
Tssr163080 61 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245425726
MGI SNP Detail
Alliance Variant
ChrX:20727414 Syn1 mRNA-UTR
Tssr163080 1 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29688752
MGI SNP Detail
Alliance Variant
ChrX:20727492 Syn1 mRNA-UTR
Tssr163080 55 bp upstream
SNP A/G G G G G G G G G G G A G G G G
rs215097781
MGI SNP Detail
Alliance Variant
ChrX:20727599 Syn1 mRNA-UTR
Tssr163080 162 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs240844168
MGI SNP Detail
Alliance Variant
ChrX:20727678 Syn1 mRNA-UTR
Tssr163080 241 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256928963
MGI SNP Detail
Alliance Variant
ChrX:20727956 Syn1 Intron
Tssr163080 519 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215144675
MGI SNP Detail
Alliance Variant
ChrX:20728054 Syn1 Intron
Tssr163080 617 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G
rs234606349
MGI SNP Detail
Alliance Variant
ChrX:20728115 Syn1 Intron
Tssr163080 678 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs29689565
MGI SNP Detail
Alliance Variant
ChrX:20728151 Syn1 Intron
Tssr163080 714 bp upstream
SNP C/T C C C C C C T C C C T C T T
rs222330630
MGI SNP Detail
Alliance Variant
ChrX:20728224 Syn1 Intron
Tssr163080 787 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs242596825
MGI SNP Detail
Alliance Variant
ChrX:20728252 Syn1 Intron
Tssr163080 815 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G T
rs252576825
MGI SNP Detail
Alliance Variant
ChrX:20728270 Syn1 Intron
Tssr163080 833 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225270685
MGI SNP Detail
Alliance Variant
ChrX:20728438 Syn1 Intron
Tssr163080 1001 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29689568
MGI SNP Detail
Alliance Variant
ChrX:20728646 Syn1 Intron
Tssr163080 1209 bp upstream
SNP A/G A A A A A A G A A A G A A G A
rs262897279
MGI SNP Detail
Alliance Variant
ChrX:20728698 Syn1 Intron
Tssr163080 1261 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228739559
MGI SNP Detail
Alliance Variant
ChrX:20728770 Syn1 Coding-Synonymous
Tssr163080 1333 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs29689571
MGI SNP Detail
Alliance Variant
ChrX:20728908 Syn1 Coding-Synonymous
Tssr163080 1471 bp upstream
SNP A/G A A A A A A A A G
rs259129703
MGI SNP Detail
Alliance Variant
ChrX:20728953 Syn1 Coding-Synonymous
Tssr163080 1516 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs229280788
MGI SNP Detail
Alliance Variant
ChrX:20729040 Syn1 Coding-Synonymous
Tssr163080 1603 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs245458191
MGI SNP Detail
Alliance Variant
ChrX:20729380 Mir5617 Noncoding-Transcript-Variant
Syn1 Intron
Tssr163080 1943 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 39 of 39

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/29/2025
MGI 6.24
The Jackson Laboratory