About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr163389
transcription start site region 163389
MGI:6091156

<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33867148
MGI SNP Detail
ChrX:52327030 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1933 bp downstream
SNP C/T T T C T
rs235274758
MGI SNP Detail
ChrX:52327055 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1908 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs260593783
MGI SNP Detail
ChrX:52327057 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1906 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs223057585
MGI SNP Detail
ChrX:52327091 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1872 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs237683805
MGI SNP Detail
ChrX:52327092 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1871 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs250047393
MGI SNP Detail
ChrX:52327150 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1813 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs221692333
MGI SNP Detail
ChrX:52327161 Plac1 within coordinates of
Rr4264 within coordinates of
Rr7525 within coordinates of
Tssr163389 1802 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239457995
MGI SNP Detail
ChrX:52327200 Plac1 within coordinates of
Rr4264 within coordinates of
Tssr163389 1763 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs260196501
MGI SNP Detail
ChrX:52327237 Plac1 within coordinates of
Tssr163389 1726 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs226383765
MGI SNP Detail
ChrX:52327287 Plac1 within coordinates of
Tssr163389 1676 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs242429202
MGI SNP Detail
ChrX:52327349 Plac1 within coordinates of
Tssr163389 1614 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264665575
MGI SNP Detail
ChrX:52327393 Plac1 within coordinates of
Tssr163389 1570 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs230939818
MGI SNP Detail
ChrX:52327394 Plac1 within coordinates of
Tssr163389 1569 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581916490
MGI SNP Detail
ChrX:52327426 Plac1 within coordinates of
Tssr163389 1537 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs585256333
MGI SNP Detail
ChrX:52327465 Plac1 within coordinates of
Tssr163389 1498 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579571902
MGI SNP Detail
ChrX:52327469 Plac1 within coordinates of
Tssr163389 1494 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582355871
MGI SNP Detail
ChrX:52327473 Plac1 within coordinates of
Tssr163389 1490 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs52411721
MGI SNP Detail
ChrX:52327481 Plac1 within coordinates of
Tssr163389 1482 bp downstream
SNP G G G G
rs585744183
MGI SNP Detail
ChrX:52327509 Plac1 within coordinates of
Tssr163389 1454 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245079636
MGI SNP Detail
ChrX:52327583 Plac1 within coordinates of
Tssr163389 1380 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259853754
MGI SNP Detail
ChrX:52327611 Plac1 within coordinates of
Tssr163389 1352 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs227320365
MGI SNP Detail
ChrX:52327615 Plac1 within coordinates of
Tssr163389 1348 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs248671261
MGI SNP Detail
ChrX:52327623 Plac1 within coordinates of
Tssr163389 1340 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217896729
MGI SNP Detail
ChrX:52327653 Plac1 within coordinates of
Tssr163389 1310 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236951433
MGI SNP Detail
ChrX:52327696 Plac1 within coordinates of
Tssr163389 1267 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248931729
MGI SNP Detail
ChrX:52327713 Plac1 within coordinates of
Tssr163389 1250 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30432342
MGI SNP Detail
ChrX:52327744 Plac1 within coordinates of
Tssr163389 1219 bp downstream
SNP A/G G G G G G G G G G A G G G G
rs30433315
MGI SNP Detail
ChrX:52327773 Plac1 within coordinates of
Tssr163389 1190 bp downstream
SNP G/T G G G G G G G G T G G T G
rs231097059
MGI SNP Detail
ChrX:52327850 Plac1 within coordinates of
Tssr163389 1113 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251657559
MGI SNP Detail
ChrX:52327927 Plac1 within coordinates of
Tssr163389 1036 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221683189
MGI SNP Detail
ChrX:52327939 Plac1 within coordinates of
Tssr163389 1024 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233227767
MGI SNP Detail
ChrX:52328076 Plac1 within coordinates of
Tssr163389 887 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264361993
MGI SNP Detail
ChrX:52328176 Plac1 within coordinates of
Tssr163389 787 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226105013
MGI SNP Detail
ChrX:52328243 Plac1 within coordinates of
Tssr163389 720 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245375605
MGI SNP Detail
ChrX:52328312 Plac1 within coordinates of
Tssr163389 651 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255626852
MGI SNP Detail
ChrX:52328659 Plac1 within coordinates of
Tssr163389 304 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30433318
MGI SNP Detail
ChrX:52328797 Plac1 within coordinates of
Tssr163389 166 bp downstream
SNP A/G A A A A A A A A A G A A G A
rs238890298
MGI SNP Detail
ChrX:52328802 Plac1 within coordinates of
Tssr163389 161 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T
rs260042791
MGI SNP Detail
ChrX:52329247 Tssr163389 272 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227309208
MGI SNP Detail
ChrX:52329250 Tssr163389 275 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs242766651
MGI SNP Detail
ChrX:52329252 Tssr163389 277 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6322925
MGI SNP Detail
ChrX:52329417 Tssr163389 442 bp upstream
SNP C/G G C G C G C G C G G C G G C C
rs47654671
MGI SNP Detail
ChrX:52329611 Tssr163389 636 bp upstream
SNP C/T T C
rs228553898
MGI SNP Detail
ChrX:52329616 Tssr163389 641 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs252387551
MGI SNP Detail
ChrX:52329745 Tssr163389 770 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214448162
MGI SNP Detail
ChrX:52329768 Tssr163389 793 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs30433323
MGI SNP Detail
ChrX:52329864 Tssr163389 889 bp upstream
SNP C/T T T T T T T T T T C T T C T
rs31350577
MGI SNP Detail
ChrX:52329928 Tssr163389 953 bp upstream
SNP A/G G G A
rs245679936
MGI SNP Detail
ChrX:52330088 Tssr163389 1113 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs214915217
MGI SNP Detail
ChrX:52330104 Tssr163389 1129 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233171782
MGI SNP Detail
ChrX:52330113 Tssr163389 1138 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30434586
MGI SNP Detail
ChrX:52330115 Tssr163389 1140 bp upstream
SNP C/T T T T T T T T T T C T T C T
rs218585191
MGI SNP Detail
ChrX:52330180 Tssr163389 1205 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs235633350
MGI SNP Detail
ChrX:52330218 Tssr163389 1243 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261115204
MGI SNP Detail
ChrX:52330241 Tssr163389 1266 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs220445222
MGI SNP Detail
ChrX:52330296 Tssr163389 1321 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30434589
MGI SNP Detail
ChrX:52330307 Tssr163389 1332 bp upstream
SNP A/G A A A A A A A A A G A A G A
rs30434592
MGI SNP Detail
ChrX:52330326 Tssr163389 1351 bp upstream
SNP C/T C C C C C C C C C T C C T C
rs580270329
MGI SNP Detail
ChrX:52330361 Tssr163389 1386 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221065139
MGI SNP Detail
ChrX:52330398 Tssr163389 1423 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242855277
MGI SNP Detail
ChrX:52330412 Tssr163389 1437 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263987136
MGI SNP Detail
ChrX:52330418 Tssr163389 1443 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241009790
MGI SNP Detail
ChrX:52330562 Tssr163389 1587 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs265263357
MGI SNP Detail
ChrX:52330611 Tssr163389 1636 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225021444
MGI SNP Detail
ChrX:52330613 Tssr163389 1638 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245804290
MGI SNP Detail
ChrX:52330629 Tssr163389 1654 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214996051
MGI SNP Detail
ChrX:52330631 Tssr163389 1656 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228904216
MGI SNP Detail
ChrX:52330656 Tssr163389 1681 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258848192
MGI SNP Detail
ChrX:52330671 Tssr163389 1696 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218504892
MGI SNP Detail
ChrX:52330798 Tssr163389 1823 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs237573256
MGI SNP Detail
ChrX:52330964 Tssr163389 1989 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory

Building initial tooltip...