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Mouse SNP Summary
Symbol
Name
ID 		Tssr163800
transcription start site region 163800
MGI:6091567

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247433430
MGI SNP Detail		 ChrX:94253463 Gm61740 within coordinates of
Tssr163800 1931 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs256791935
MGI SNP Detail		 ChrX:94253467 Gm61740 within coordinates of
Tssr163800 1927 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs29086779
MGI SNP Detail		 ChrX:94253705 Gm61740 within coordinates of
Tssr163800 1689 bp downstream
 SNP A/G G G G G G G A G G G A G G A G
rs29086778
MGI SNP Detail		 ChrX:94253786 Gm61740 within coordinates of
Tssr163800 1608 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs29086777
MGI SNP Detail		 ChrX:94253883 Gm61740 within coordinates of
Tssr163800 1511 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs228204791
MGI SNP Detail		 ChrX:94253897 Gm61740 within coordinates of
Tssr163800 1497 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs257437645
MGI SNP Detail		 ChrX:94253921 Gm61740 within coordinates of
Tssr163800 1473 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs29086776
MGI SNP Detail		 ChrX:94253941 Gm61740 within coordinates of
Tssr163800 1453 bp downstream
 SNP C/T C C C C C C T C C C T C C C C
rs579821189
MGI SNP Detail		 ChrX:94254333 Gm61740 within coordinates of
Tssr163800 1061 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583877393
MGI SNP Detail		 ChrX:94254334 Gm61740 within coordinates of
Tssr163800 1060 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs587331604
MGI SNP Detail		 ChrX:94254347 Gm61740 within coordinates of
Tssr163800 1047 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29086775
MGI SNP Detail		 ChrX:94254388 Gm61740 within coordinates of
Tssr163800 1006 bp downstream
 SNP A/C C C C C C C A C C C A C C A C
rs31858723
MGI SNP Detail		 ChrX:94254433 Gm61740 within coordinates of
Tssr163800 961 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs29086774
MGI SNP Detail		 ChrX:94254500 Gm61740 within coordinates of
Tssr163800 894 bp downstream
 SNP A/C A A A A A A C A A A C A A A
rs232454108
MGI SNP Detail		 ChrX:94254553 Gm61740 within coordinates of
Tssr163800 841 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs250187233
MGI SNP Detail		 ChrX:94254560 Gm61740 within coordinates of
Tssr163800 834 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs29086193
MGI SNP Detail		 ChrX:94254667 Gm61740 within coordinates of
Tssr163800 727 bp downstream
 SNP A/G A A A A A A A A A A A A A G A
rs238457776
MGI SNP Detail		 ChrX:94254704 Gm61740 within coordinates of
Tssr163800 690 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs262751861
MGI SNP Detail		 ChrX:94254734 Gm61740 within coordinates of
Tssr163800 660 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C
rs226427814
MGI SNP Detail		 ChrX:94254819 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 575 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29086192
MGI SNP Detail		 ChrX:94254841 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 553 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs31858722
MGI SNP Detail		 ChrX:94254907 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 487 bp downstream
 SNP C/T T T T T T T T T T T T T T C T
rs218161386
MGI SNP Detail		 ChrX:94255022 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 372 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29086191
MGI SNP Detail		 ChrX:94255052 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 342 bp downstream
 SNP C/G G G G G G G C G G G C G G C C
rs29086190
MGI SNP Detail		 ChrX:94255096 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 298 bp downstream
 SNP G/T G G G G G G T G G G T G G T G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29086189
MGI SNP Detail		 ChrX:94255131 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 263 bp downstream
 SNP C/T C C C C C C T C C C T C C C C
rs31858721
MGI SNP Detail		 ChrX:94255147 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 247 bp downstream
 SNP A/G A A A A A A A A A G A A G A
rs266198461
MGI SNP Detail		 ChrX:94255162 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 232 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs233259825
MGI SNP Detail		 ChrX:94255195 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 199 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29086188
MGI SNP Detail		 ChrX:94255203 Gm6092 within coordinates of
Gm61740 within coordinates of
Tssr163800 191 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs254118366
MGI SNP Detail		 ChrX:94255418 Gm61740 within coordinates of
Tssr163800 10 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226462742
MGI SNP Detail		 ChrX:94255493 Gm61740 within coordinates of
Tssr163800 85 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T C
rs244139079
MGI SNP Detail		 ChrX:94255499 Gm61740 within coordinates of
Tssr163800 91 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213359913
MGI SNP Detail		 ChrX:94255583 Gm61740 within coordinates of
Tssr163800 175 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240638610
MGI SNP Detail		 ChrX:94255642 Gm61740 within coordinates of
Tssr163800 234 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs251954181
MGI SNP Detail		 ChrX:94255766 Gm61740 within coordinates of
Tssr163800 358 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs218845108
MGI SNP Detail		 ChrX:94255768 Gm61740 within coordinates of
Tssr163800 360 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G
rs239245154
MGI SNP Detail		 ChrX:94255780 Gm61740 within coordinates of
Tssr163800 372 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250319396
MGI SNP Detail		 ChrX:94255788 Gm61740 within coordinates of
Tssr163800 380 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218013888
MGI SNP Detail		 ChrX:94255993 Gm61740 within coordinates of
Tssr163800 585 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232800625
MGI SNP Detail		 ChrX:94256008 Gm61740 within coordinates of
Tssr163800 600 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581168846
MGI SNP Detail		 ChrX:94256024 Gm61740 within coordinates of
Tssr163800 616 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs251160793
MGI SNP Detail		 ChrX:94256045 Gm61740 within coordinates of
Tssr163800 637 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224940793
MGI SNP Detail		 ChrX:94256084 Gm61740 within coordinates of
Tssr163800 676 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs247927921
MGI SNP Detail		 ChrX:94256117 Gm61740 within coordinates of
Tssr163800 709 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs264459269
MGI SNP Detail		 ChrX:94256275 Gm61740 within coordinates of
Tssr163800 867 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs226413963
MGI SNP Detail		 ChrX:94256353 Gm61740 within coordinates of
Tssr163800 945 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236843780
MGI SNP Detail		 ChrX:94256396 Gm61740 within coordinates of
Tssr163800 988 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A
rs254155058
MGI SNP Detail		 ChrX:94256488 Gm61740 within coordinates of
Tssr163800 1080 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226322917
MGI SNP Detail		 ChrX:94256599 Gm61740 within coordinates of
Tssr163800 1191 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244077246
MGI SNP Detail		 ChrX:94256643 Gm61740 within coordinates of
Tssr163800 1235 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs265824470
MGI SNP Detail		 ChrX:94256645 Gm61740 within coordinates of
Tssr163800 1237 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs231972201
MGI SNP Detail		 ChrX:94256680 Gm61740 within coordinates of
Tssr163800 1272 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256887807
MGI SNP Detail		 ChrX:94256712 Gm61740 within coordinates of
Tssr163800 1304 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218681354
MGI SNP Detail		 ChrX:94256717 Gm61740 within coordinates of
Tssr163800 1309 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs241832670
MGI SNP Detail		 ChrX:94256907 Gm61740 within coordinates of
Tssr163800 1499 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244020131
MGI SNP Detail		 ChrX:94257027 Gm61740 within coordinates of
Tssr163800 1619 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs211949374
MGI SNP Detail		 ChrX:94257046 Gm61740 within coordinates of
Tssr163800 1638 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs232690059
MGI SNP Detail		 ChrX:94257052 Gm61740 within coordinates of
Tssr163800 1644 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs583777536
MGI SNP Detail		 ChrX:94257063 Gm61740 within coordinates of
Tssr163800 1655 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A
rs587387914
MGI SNP Detail		 ChrX:94257070 Gm61740 within coordinates of
Tssr163800 1662 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs580720658
MGI SNP Detail		 ChrX:94257071 Gm61740 within coordinates of
Tssr163800 1663 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs251106828
MGI SNP Detail		 ChrX:94257081 Gm61740 within coordinates of
Tssr163800 1673 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225217468
MGI SNP Detail		 ChrX:94257094 Gm61740 within coordinates of
Tssr163800 1686 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs237819688
MGI SNP Detail		 ChrX:94257108 Gm61740 within coordinates of
Tssr163800 1700 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264274447
MGI SNP Detail		 ChrX:94257160 Gm61740 within coordinates of
Tssr163800 1752 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs225785601
MGI SNP Detail		 ChrX:94257161 Gm61740 within coordinates of
Tssr163800 1753 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236883113
MGI SNP Detail		 ChrX:94257169 Gm61740 within coordinates of
Tssr163800 1761 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs254091991
MGI SNP Detail		 ChrX:94257197 Gm61740 within coordinates of
Tssr163800 1789 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A A A A A A
rs220186579
MGI SNP Detail		 ChrX:94257198 Gm61740 within coordinates of
Tssr163800 1790 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs237883442
MGI SNP Detail		 ChrX:94257359 Gm61740 within coordinates of
Tssr163800 1951 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263761801
MGI SNP Detail		 ChrX:94257388 Gm61740 within coordinates of
Tssr163800 1980 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory