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Mouse SNP Summary
Symbol
Name
ID 		Tssr163949
transcription start site region 163949
MGI:6091716

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254190640
MGI SNP Detail		 ChrX:102522243 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1873 bp downstream
Xist within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C
rs220265283
MGI SNP Detail		 ChrX:102522246 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1870 bp downstream
Xist within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T C T T T T T T T T T T T
rs237315772
MGI SNP Detail		 ChrX:102522248 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1868 bp downstream
Xist within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C
rs257827554
MGI SNP Detail		 ChrX:102522249 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1867 bp downstream
Xist within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T C T T T T T T T T T T T
rs579506087
MGI SNP Detail		 ChrX:102522281 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1835 bp downstream
Xist within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33872206
MGI SNP Detail		 ChrX:102522387 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1729 bp downstream
Xist within coordinates of
 SNP C/T C T
rs259729786
MGI SNP Detail		 ChrX:102522414 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1702 bp downstream
Xist within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs583068014
MGI SNP Detail		 ChrX:102522502 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1614 bp downstream
Xist within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586679586
MGI SNP Detail		 ChrX:102522523 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1593 bp downstream
Xist within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580888303
MGI SNP Detail		 ChrX:102522526 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1590 bp downstream
Xist within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G
rs583198275
MGI SNP Detail		 ChrX:102522593 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1523 bp downstream
Xist within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs587223056
MGI SNP Detail		 ChrX:102522594 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1522 bp downstream
Xist within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G G G G G G G G G G G G G
rs581348050
MGI SNP Detail		 ChrX:102522596 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1520 bp downstream
Xist within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs585216977
MGI SNP Detail		 ChrX:102522598 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1518 bp downstream
Xist within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579387959
MGI SNP Detail		 ChrX:102522599 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1517 bp downstream
Xist within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581733009
MGI SNP Detail		 ChrX:102522834 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1282 bp downstream
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584252464
MGI SNP Detail		 ChrX:102523090 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 1026 bp downstream
Xist within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578436776
MGI SNP Detail		 ChrX:102523372 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 744 bp downstream
Xist within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs582052695
MGI SNP Detail		 ChrX:102523429 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 687 bp downstream
Xist within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs585550672
MGI SNP Detail		 ChrX:102523452 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 664 bp downstream
Xist within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578975248
MGI SNP Detail		 ChrX:102523472 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 644 bp downstream
Xist within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G
rs582423974
MGI SNP Detail		 ChrX:102523521 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 595 bp downstream
Xist within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586150472
MGI SNP Detail		 ChrX:102523525 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 591 bp downstream
Xist within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580419120
MGI SNP Detail		 ChrX:102523544 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 572 bp downstream
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584065056
MGI SNP Detail		 ChrX:102523557 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 559 bp downstream
Xist within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585369389
MGI SNP Detail		 ChrX:102523687 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 429 bp downstream
Xist within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579645801
MGI SNP Detail		 ChrX:102523693 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 423 bp downstream
Xist within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs264010471
MGI SNP Detail		 ChrX:102523700 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 416 bp downstream
Xist within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs229260883
MGI SNP Detail		 ChrX:102523722 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 394 bp downstream
Xist within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs243492602
MGI SNP Detail		 ChrX:102523808 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 308 bp downstream
Xist within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G A G G G G A G G G G G A G G G G G G G G G G G
rs214315004
MGI SNP Detail		 ChrX:102523824 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 292 bp downstream
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231532078
MGI SNP Detail		 ChrX:102523850 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 266 bp downstream
Xist within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs583338677
MGI SNP Detail		 ChrX:102523988 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 128 bp downstream
Xist within coordinates of
 SNP C/G C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C
rs245183290
MGI SNP Detail		 ChrX:102524191 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 24 bp upstream
Tssr163950 within coordinates of
Xist within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217337965
MGI SNP Detail		 ChrX:102524285 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 118 bp upstream
Xist within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs237964379
MGI SNP Detail		 ChrX:102524315 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 148 bp upstream
Tssr163951 within coordinates of
Xist within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G
rs264232548
MGI SNP Detail		 ChrX:102524442 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 275 bp upstream
Xist within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31295127
MGI SNP Detail		 ChrX:102524457 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 290 bp upstream
Xist within coordinates of
 SNP C/G G G G C
rs225817007
MGI SNP Detail		 ChrX:102524528 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 361 bp upstream
Tssr163953 within coordinates of
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs231078307
MGI SNP Detail		 ChrX:102524562 Gm26992 within coordinates of
Gm55587 within coordinates of
Tsix within coordinates of
Tssr163949 395 bp upstream
Xist within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs248508764
MGI SNP Detail		 ChrX:102524619 Gm26992 within coordinates of
Gm55587 within coordinates of
Tsix within coordinates of
Tssr163949 452 bp upstream
Xist within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237823648
MGI SNP Detail		 ChrX:102524942 Gm26992 within coordinates of
Tsix within coordinates of
Tssr163949 775 bp upstream
Xist within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263459235
MGI SNP Detail		 ChrX:102525462 Tsix within coordinates of
Tssr163949 1295 bp upstream
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs223847590
MGI SNP Detail		 ChrX:102525719 Cpgi22887 within coordinates of
Tsix within coordinates of
Tssr163949 1552 bp upstream
Xist within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A T A A A A A A A A A A A A
rs248128807
MGI SNP Detail		 ChrX:102525795 Cpgi22887 within coordinates of
Tsix within coordinates of
Tssr163949 1628 bp upstream
Xist within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265848601
MGI SNP Detail		 ChrX:102525846 Cpgi22887 within coordinates of
Tsix within coordinates of
Tssr163949 1679 bp upstream
Xist within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224651647
MGI SNP Detail		 ChrX:102525866 Tsix within coordinates of
Tssr163949 1699 bp upstream
Xist within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237196418
MGI SNP Detail		 ChrX:102525981 Tsix within coordinates of
Tssr163949 1814 bp upstream
Xist within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs258285373
MGI SNP Detail		 ChrX:102526036 Tsix within coordinates of
Tssr163949 1869 bp upstream
Xist within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory