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Mouse SNP Summary
Symbol
Name
ID
Tssr164242
transcription start site region 164242
MGI:6092009

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259190072
MGI SNP Detail
Alliance Variant
ChrX:139441862 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tsc22d3 Splice-Site
Tssr164242 1984 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232421727
MGI SNP Detail
Alliance Variant
ChrX:139441893 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1953 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585364256
MGI SNP Detail
Alliance Variant
ChrX:139441934 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1912 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255499255
MGI SNP Detail
Alliance Variant
ChrX:139441976 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1870 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs214905259
MGI SNP Detail
Alliance Variant
ChrX:139441987 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1859 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236692595
MGI SNP Detail
Alliance Variant
ChrX:139442023 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1823 bp downstream
SNP C/T C T
rs243373501
MGI SNP Detail
Alliance Variant
ChrX:139442031 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1815 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216913427
MGI SNP Detail
Alliance Variant
ChrX:139442037 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1809 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs31204601
MGI SNP Detail
Alliance Variant
ChrX:139442087 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1759 bp downstream
SNP C/T T C C T C
rs251548632
MGI SNP Detail
Alliance Variant
ChrX:139442150 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1696 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579242666
MGI SNP Detail
Alliance Variant
ChrX:139442181 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1665 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs224811964
MGI SNP Detail
Alliance Variant
ChrX:139442240 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1606 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235859672
MGI SNP Detail
Alliance Variant
ChrX:139442242 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1604 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262332361
MGI SNP Detail
Alliance Variant
ChrX:139442265 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1581 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220047044
MGI SNP Detail
Alliance Variant
ChrX:139442333 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1513 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237837593
MGI SNP Detail
Alliance Variant
ChrX:139442404 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1442 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260563178
MGI SNP Detail
Alliance Variant
ChrX:139442436 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1410 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223333777
MGI SNP Detail
Alliance Variant
ChrX:139442442 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1404 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240519163
MGI SNP Detail
Alliance Variant
ChrX:139442463 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1383 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259861387
MGI SNP Detail
Alliance Variant
ChrX:139442510 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1336 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233208955
MGI SNP Detail
Alliance Variant
ChrX:139442718 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1128 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs250734611
MGI SNP Detail
Alliance Variant
ChrX:139442776 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1070 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265305679
MGI SNP Detail
Alliance Variant
ChrX:139442825 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1021 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227946119
MGI SNP Detail
Alliance Variant
ChrX:139442833 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1013 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G C G G G G
rs243223113
MGI SNP Detail
Alliance Variant
ChrX:139443092 Tsc22d3 Intron
Tsc22d3 mRNA-UTR
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 754 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216943689
MGI SNP Detail
Alliance Variant
ChrX:139443144 Tsc22d3 Intron
Tsc22d3 mRNA-UTR
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 702 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31321809
MGI SNP Detail
Alliance Variant
ChrX:139443307 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 539 bp downstream
SNP A/G A G A G G
rs245617765
MGI SNP Detail
Alliance Variant
ChrX:139443317 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 529 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217205436
MGI SNP Detail
Alliance Variant
ChrX:139443326 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 520 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237656766
MGI SNP Detail
Alliance Variant
ChrX:139443381 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164239 within coordinates of
Tssr164242 465 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A G A A A A
rs257592543
MGI SNP Detail
Alliance Variant
ChrX:139443416 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164239 within coordinates of
Tssr164242 430 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211737206
MGI SNP Detail
Alliance Variant
ChrX:139444226 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 369 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581849636
MGI SNP Detail
Alliance Variant
ChrX:139444304 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 447 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs230420201
MGI SNP Detail
Alliance Variant
ChrX:139444361 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 504 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254111071
MGI SNP Detail
Alliance Variant
ChrX:139444465 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 608 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs223369942
MGI SNP Detail
Alliance Variant
ChrX:139444635 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 778 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240359089
MGI SNP Detail
Alliance Variant
ChrX:139444702 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 845 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263337425
MGI SNP Detail
Alliance Variant
ChrX:139444761 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 904 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33877086
MGI SNP Detail
Alliance Variant
ChrX:139444797 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 940 bp upstream
SNP C/T T C C T C
rs246830500
MGI SNP Detail
Alliance Variant
ChrX:139444831 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 974 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262830123
MGI SNP Detail
Alliance Variant
ChrX:139444910 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1053 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs228249450
MGI SNP Detail
Alliance Variant
ChrX:139444971 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1114 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs236894947
MGI SNP Detail
Alliance Variant
ChrX:139444984 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1127 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259160797
MGI SNP Detail
Alliance Variant
ChrX:139445052 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1195 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G C G G G G G G G C G G G G
rs229486168
MGI SNP Detail
Alliance Variant
ChrX:139445071 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1214 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245476943
MGI SNP Detail
Alliance Variant
ChrX:139445105 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1248 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217486784
MGI SNP Detail
Alliance Variant
ChrX:139445134 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1277 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs230554746
MGI SNP Detail
Alliance Variant
ChrX:139445152 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1295 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs256692406
MGI SNP Detail
Alliance Variant
ChrX:139445252 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1395 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs211763147
MGI SNP Detail
Alliance Variant
ChrX:139445284 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1427 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230269737
MGI SNP Detail
Alliance Variant
ChrX:139445326 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1469 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs254149283
MGI SNP Detail
Alliance Variant
ChrX:139445411 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1554 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs217155680
MGI SNP Detail
Alliance Variant
ChrX:139445485 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1628 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs233603286
MGI SNP Detail
Alliance Variant
ChrX:139445486 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1629 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs259380209
MGI SNP Detail
Alliance Variant
ChrX:139445570 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1713 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221941364
MGI SNP Detail
Alliance Variant
ChrX:139445650 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164242 1793 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 56 of 56

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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