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Mouse SNP Summary
Symbol
Name
ID 		Tssr164244
transcription start site region 164244
MGI:6092011

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232421727
MGI SNP Detail
Alliance Variant		 ChrX:139441893 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1999 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585364256
MGI SNP Detail
Alliance Variant		 ChrX:139441934 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1958 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255499255
MGI SNP Detail
Alliance Variant		 ChrX:139441976 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1916 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs214905259
MGI SNP Detail
Alliance Variant		 ChrX:139441987 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1905 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236692595
MGI SNP Detail
Alliance Variant		 ChrX:139442023 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1869 bp downstream
 SNP C/T C T
rs243373501
MGI SNP Detail
Alliance Variant		 ChrX:139442031 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1861 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216913427
MGI SNP Detail
Alliance Variant		 ChrX:139442037 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1855 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs31204601
MGI SNP Detail
Alliance Variant		 ChrX:139442087 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1805 bp downstream
 SNP C/T T C C T C
rs251548632
MGI SNP Detail
Alliance Variant		 ChrX:139442150 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1742 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579242666
MGI SNP Detail
Alliance Variant		 ChrX:139442181 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1711 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs224811964
MGI SNP Detail
Alliance Variant		 ChrX:139442240 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1652 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235859672
MGI SNP Detail
Alliance Variant		 ChrX:139442242 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1650 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262332361
MGI SNP Detail
Alliance Variant		 ChrX:139442265 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1627 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220047044
MGI SNP Detail
Alliance Variant		 ChrX:139442333 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1559 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237837593
MGI SNP Detail
Alliance Variant		 ChrX:139442404 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1488 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260563178
MGI SNP Detail
Alliance Variant		 ChrX:139442436 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1456 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223333777
MGI SNP Detail
Alliance Variant		 ChrX:139442442 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1450 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240519163
MGI SNP Detail
Alliance Variant		 ChrX:139442463 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1429 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259861387
MGI SNP Detail
Alliance Variant		 ChrX:139442510 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1382 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233208955
MGI SNP Detail
Alliance Variant		 ChrX:139442718 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1174 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs250734611
MGI SNP Detail
Alliance Variant		 ChrX:139442776 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1116 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265305679
MGI SNP Detail
Alliance Variant		 ChrX:139442825 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1067 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227946119
MGI SNP Detail
Alliance Variant		 ChrX:139442833 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1059 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G C G G G G
rs243223113
MGI SNP Detail
Alliance Variant		 ChrX:139443092 Tsc22d3 Intron
Tsc22d3 mRNA-UTR
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 800 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs216943689
MGI SNP Detail
Alliance Variant		 ChrX:139443144 Tsc22d3 Intron
Tsc22d3 mRNA-UTR
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 748 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31321809
MGI SNP Detail
Alliance Variant		 ChrX:139443307 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 585 bp downstream
 SNP A/G A G A G G
rs245617765
MGI SNP Detail
Alliance Variant		 ChrX:139443317 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 575 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217205436
MGI SNP Detail
Alliance Variant		 ChrX:139443326 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 566 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237656766
MGI SNP Detail
Alliance Variant		 ChrX:139443381 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164239 within coordinates of
Tssr164244 511 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A G A A A A
rs257592543
MGI SNP Detail
Alliance Variant		 ChrX:139443416 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164239 within coordinates of
Tssr164244 476 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211737206
MGI SNP Detail
Alliance Variant		 ChrX:139444226 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 324 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581849636
MGI SNP Detail
Alliance Variant		 ChrX:139444304 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 402 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs230420201
MGI SNP Detail
Alliance Variant		 ChrX:139444361 Rr693981 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 459 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254111071
MGI SNP Detail
Alliance Variant		 ChrX:139444465 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 563 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs223369942
MGI SNP Detail
Alliance Variant		 ChrX:139444635 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 733 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240359089
MGI SNP Detail
Alliance Variant		 ChrX:139444702 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 800 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263337425
MGI SNP Detail
Alliance Variant		 ChrX:139444761 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 859 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33877086
MGI SNP Detail
Alliance Variant		 ChrX:139444797 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 895 bp upstream
 SNP C/T T C C T C
rs246830500
MGI SNP Detail
Alliance Variant		 ChrX:139444831 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 929 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262830123
MGI SNP Detail
Alliance Variant		 ChrX:139444910 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1008 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs228249450
MGI SNP Detail
Alliance Variant		 ChrX:139444971 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1069 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs236894947
MGI SNP Detail
Alliance Variant		 ChrX:139444984 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1082 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259160797
MGI SNP Detail
Alliance Variant		 ChrX:139445052 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1150 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G C G G G G G G G C G G G G
rs229486168
MGI SNP Detail
Alliance Variant		 ChrX:139445071 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1169 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245476943
MGI SNP Detail
Alliance Variant		 ChrX:139445105 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1203 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217486784
MGI SNP Detail
Alliance Variant		 ChrX:139445134 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1232 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs230554746
MGI SNP Detail
Alliance Variant		 ChrX:139445152 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1250 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs256692406
MGI SNP Detail
Alliance Variant		 ChrX:139445252 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1350 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs211763147
MGI SNP Detail
Alliance Variant		 ChrX:139445284 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1382 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs230269737
MGI SNP Detail
Alliance Variant		 ChrX:139445326 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1424 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254149283
MGI SNP Detail
Alliance Variant		 ChrX:139445411 Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1509 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs217155680
MGI SNP Detail
Alliance Variant		 ChrX:139445485 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1583 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs233603286
MGI SNP Detail
Alliance Variant		 ChrX:139445486 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1584 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs259380209
MGI SNP Detail
Alliance Variant		 ChrX:139445570 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1668 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221941364
MGI SNP Detail
Alliance Variant		 ChrX:139445650 Rr693984 within coordinates of
Tsc22d3 Intron
Tsc22d3 Noncoding-Transcript-Variant
Tssr164244 1748 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 55 of 55
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MGI 6.24 		The Jackson Laboratory