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Mouse SNP Summary
Symbol
Name
ID 		Gm55653
predicted gene, 55653
MGI:6847773

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Showing SNP(s) 1 - 70 of 70

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585549785
MGI SNP Detail		 Chr3:25598186 Gm55653 1998 bp upstream
Nlgn1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs33778349
MGI SNP Detail		 Chr3:25598200 Gm55653 1984 bp upstream
Nlgn1 within coordinates of
 SNP A/C A C A C A A C A C A
rs33778352
MGI SNP Detail		 Chr3:25598236 Gm55653 1948 bp upstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G A G G G G
rs33779035
MGI SNP Detail		 Chr3:25598256 Gm55653 1928 bp upstream
Nlgn1 within coordinates of
 SNP C/G G G G G G G G G G G C G G G G
rs579937233
MGI SNP Detail		 Chr3:25598318 Gm55653 1866 bp upstream
Nlgn1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T G T T T T T T G T G T T T T T G T T T T
rs582009820
MGI SNP Detail		 Chr3:25598425 Gm55653 1759 bp upstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33779043
MGI SNP Detail		 Chr3:25598450 Gm55653 1734 bp upstream
Nlgn1 within coordinates of
 SNP C/T T T C T C T C T C T T C T T C
rs33779786
MGI SNP Detail		 Chr3:25598498 Gm55653 1686 bp upstream
Nlgn1 within coordinates of
 SNP C/T T T C T C T C C T T C T T C
rs33779789
MGI SNP Detail		 Chr3:25598512 Gm55653 1672 bp upstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T C T T T T
rs585656413
MGI SNP Detail		 Chr3:25598680 Gm55653 1504 bp upstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580143722
MGI SNP Detail		 Chr3:25598712 Gm55653 1472 bp upstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222943629
MGI SNP Detail		 Chr3:25598728 Gm55653 1456 bp upstream
Nlgn1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs583557472
MGI SNP Detail		 Chr3:25599023 Gm55653 1161 bp upstream
Nlgn1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs587439796
MGI SNP Detail		 Chr3:25599025 Gm55653 1159 bp upstream
Nlgn1 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580523951
MGI SNP Detail		 Chr3:25599073 Gm55653 1111 bp upstream
Nlgn1 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583261050
MGI SNP Detail		 Chr3:25599113 Gm55653 1071 bp upstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs33780595
MGI SNP Detail		 Chr3:25599296 Gm55653 888 bp upstream
Nlgn1 within coordinates of
 SNP A/G A A A A A G A A A A A A
rs33780597
MGI SNP Detail		 Chr3:25599504 Gm55653 680 bp upstream
Nlgn1 within coordinates of
 SNP A/C A A C A C A C C A A C A A C
rs33780600
MGI SNP Detail		 Chr3:25599532 Gm55653 652 bp upstream
Nlgn1 within coordinates of
 SNP A/G A A G A G A G G A G G A A G
rs584435182
MGI SNP Detail		 Chr3:25599593 Gm55653 591 bp upstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C T C C C C C C C C C C
rs578468663
MGI SNP Detail		 Chr3:25599725 Gm55653 459 bp upstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C C C C C C C C C C C C
rs581797978
MGI SNP Detail		 Chr3:25599794 Gm55653 390 bp upstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33780603
MGI SNP Detail		 Chr3:25599816 Gm55653 368 bp upstream
Nlgn1 within coordinates of
 SNP A/T A A A A A A T A A A A A A A A
rs33773710
MGI SNP Detail		 Chr3:25600047 Gm55653 137 bp upstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
rs33773713
MGI SNP Detail		 Chr3:25600106 Gm55653 78 bp upstream
Nlgn1 within coordinates of
 SNP G/T G T G G G T G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262387341
MGI SNP Detail		 Chr3:25600311 Gm55653 within coordinates of
Nlgn1 within coordinates of
 SNP A/C C A
rs211893974
MGI SNP Detail		 Chr3:25600322 Gm55653 4 bp downstream
Nlgn1 within coordinates of
 SNP G/T G T
rs578592057
MGI SNP Detail		 Chr3:25600513 Gm55653 195 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582713565
MGI SNP Detail		 Chr3:25600767 Gm55653 449 bp downstream
Nlgn1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C A C C C C C C C C C C C C C C C C C C C C C
rs586067726
MGI SNP Detail		 Chr3:25600783 Gm55653 465 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580620103
MGI SNP Detail		 Chr3:25601041 Gm55653 723 bp downstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583961629
MGI SNP Detail		 Chr3:25601043 Gm55653 725 bp downstream
Nlgn1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586240290
MGI SNP Detail		 Chr3:25601048 Gm55653 730 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs263434160
MGI SNP Detail		 Chr3:25601118 Gm55653 800 bp downstream
Nlgn1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579564869
MGI SNP Detail		 Chr3:25601124 Gm55653 806 bp downstream
Nlgn1 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582953918
MGI SNP Detail		 Chr3:25601239 Gm55653 921 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586555861
MGI SNP Detail		 Chr3:25601248 Gm55653 930 bp downstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6347274
MGI SNP Detail		 Chr3:25601255 Gm55653 937 bp downstream
Nlgn1 within coordinates of
 SNP C/T T C
rs580995027
MGI SNP Detail		 Chr3:25601263 Gm55653 945 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583881401
MGI SNP Detail		 Chr3:25601268 Gm55653 950 bp downstream
Nlgn1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs587094752
MGI SNP Detail		 Chr3:25601273 Gm55653 955 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6347734
MGI SNP Detail		 Chr3:25601292 Gm55653 974 bp downstream
Nlgn1 within coordinates of
 SNP G/T T T T T T T G T T T G T T G T
rs581280196
MGI SNP Detail		 Chr3:25601363 Gm55653 1045 bp downstream
Nlgn1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs6348296
MGI SNP Detail		 Chr3:25601389 Gm55653 1071 bp downstream
Nlgn1 within coordinates of
 SNP C/T T C
rs223970902
MGI SNP Detail		 Chr3:25601430 Gm55653 1112 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243719153
MGI SNP Detail		 Chr3:25601441 Gm55653 1123 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6348833
MGI SNP Detail		 Chr3:25601495 Gm55653 1177 bp downstream
Nlgn1 within coordinates of
 SNP C/G C G
rs585298854
MGI SNP Detail		 Chr3:25601548 Gm55653 1230 bp downstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228699943
MGI SNP Detail		 Chr3:25601603 Gm55653 1285 bp downstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs243478412
MGI SNP Detail		 Chr3:25601621 Gm55653 1303 bp downstream
Nlgn1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G T G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6349480
MGI SNP Detail		 Chr3:25601634 Gm55653 1316 bp downstream
Nlgn1 within coordinates of
 SNP C/T T C C T
rs6349542
MGI SNP Detail		 Chr3:25601668 Gm55653 1350 bp downstream
Nlgn1 within coordinates of
 SNP C/T C T
rs579191015
MGI SNP Detail		 Chr3:25601687 Gm55653 1369 bp downstream
Nlgn1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs580673790
MGI SNP Detail		 Chr3:25601711 Gm55653 1393 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584241453
MGI SNP Detail		 Chr3:25601721 Gm55653 1403 bp downstream
Nlgn1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33776666
MGI SNP Detail		 Chr3:25601778 Gm55653 1460 bp downstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G A G G A G
rs578809029
MGI SNP Detail		 Chr3:25601853 Gm55653 1535 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582233284
MGI SNP Detail		 Chr3:25601913 Gm55653 1595 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586166910
MGI SNP Detail		 Chr3:25602019 Gm55653 1701 bp downstream
Nlgn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579023931
MGI SNP Detail		 Chr3:25602042 Gm55653 1724 bp downstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T C T T T T T T T C T T T T
rs582461720
MGI SNP Detail		 Chr3:25602106 Gm55653 1788 bp downstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs33777545
MGI SNP Detail		 Chr3:25602133 Gm55653 1815 bp downstream
Nlgn1 within coordinates of
 SNP C/G C C C C C C C C C C C G C
rs580289330
MGI SNP Detail		 Chr3:25602134 Gm55653 1816 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583045514
MGI SNP Detail		 Chr3:25602185 Gm55653 1867 bp downstream
Nlgn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585410160
MGI SNP Detail		 Chr3:25602231 Gm55653 1913 bp downstream
Nlgn1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs579968411
MGI SNP Detail		 Chr3:25602271 Gm55653 1953 bp downstream
Nlgn1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C A C C C C C C A C C C C C C C C C C C
rs583530637
MGI SNP Detail		 Chr3:25602275 Gm55653 1957 bp downstream
Nlgn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T C T T T T T T C T T T T
rs586961527
MGI SNP Detail		 Chr3:25602286 Gm55653 1968 bp downstream
Nlgn1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C A C C C C C C C C C C
rs581384661
MGI SNP Detail		 Chr3:25602291 Gm55653 1973 bp downstream
Nlgn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A A
rs583625070
MGI SNP Detail		 Chr3:25602309 Gm55653 1991 bp downstream
Nlgn1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 70 of 70
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12/10/2024
MGI 6.24 		The Jackson Laboratory