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Mouse SNP Summary
Symbol
Name
ID 		Gm55864
predicted gene, 55864
MGI:6848193

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49328269
MGI SNP Detail		 Chr10:60958956 Gm55864 1960 bp downstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C T C C C T C C C T C T
rs219324670
MGI SNP Detail		 Chr10:60958969 Gm55864 1947 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs248919431
MGI SNP Detail		 Chr10:60959152 Gm55864 1764 bp downstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236461838
MGI SNP Detail		 Chr10:60959197 Gm55864 1719 bp downstream
Sgpl1 within coordinates of
 SNP A/G G A
rs256485679
MGI SNP Detail		 Chr10:60959210 Gm55864 1706 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs214523475
MGI SNP Detail		 Chr10:60959220 Gm55864 1696 bp downstream
Sgpl1 within coordinates of
 SNP A/C C A
rs216254588
MGI SNP Detail		 Chr10:60959399 Gm55864 1517 bp downstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237330033
MGI SNP Detail		 Chr10:60959421 Gm55864 1495 bp downstream
Sgpl1 within coordinates of
 SNP C/T C T
rs48282189
MGI SNP Detail		 Chr10:60959432 Gm55864 1484 bp downstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A G A A A G A A A G A G
rs221655955
MGI SNP Detail		 Chr10:60959497 Gm55864 1419 bp downstream
Sgpl1 within coordinates of
 SNP C/G C G
rs241181700
MGI SNP Detail		 Chr10:60959504 Gm55864 1412 bp downstream
Sgpl1 within coordinates of
 SNP C/T T C
rs47823719
MGI SNP Detail		 Chr10:60959540 Gm55864 1376 bp downstream
Sgpl1 within coordinates of
 SNP C/T C T C T C T C T
rs49906858
MGI SNP Detail		 Chr10:60959644 Gm55864 1272 bp downstream
Sgpl1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T A
rs51840970
MGI SNP Detail		 Chr10:60959674 Gm55864 1242 bp downstream
Sgpl1 within coordinates of
 SNP A/G A A A A A G A A A G G A G A
rs244751964
MGI SNP Detail		 Chr10:60959694 Gm55864 1222 bp downstream
Sgpl1 within coordinates of
 SNP C/T T C
rs262275689
MGI SNP Detail		 Chr10:60959706 Gm55864 1210 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs230916267
MGI SNP Detail		 Chr10:60959739 Gm55864 1177 bp downstream
Sgpl1 within coordinates of
 SNP C/T T C
rs47466611
MGI SNP Detail		 Chr10:60959814 Gm55864 1102 bp downstream
Sgpl1 within coordinates of
 SNP A/C C C C C C C A C C C A C C C A C A
rs48106648
MGI SNP Detail		 Chr10:60959829 Gm55864 1087 bp downstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G A G G G A A G G A G A
rs580553270
MGI SNP Detail		 Chr10:60959854 Gm55864 1062 bp downstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs47342849
MGI SNP Detail		 Chr10:60959872 Gm55864 1044 bp downstream
Sgpl1 within coordinates of
 SNP A/C C C C C C C C C C C C C A A
rs48077289
MGI SNP Detail		 Chr10:60959892 Gm55864 1024 bp downstream
Sgpl1 within coordinates of
 SNP C/G G G G G G G C G G G C G G G C G C
rs235629531
MGI SNP Detail		 Chr10:60959982 Gm55864 934 bp downstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49288706
MGI SNP Detail		 Chr10:60959987 Gm55864 929 bp downstream
Sgpl1 within coordinates of
 SNP G/T T T T T T T G T T T T T T G T
rs52612969
MGI SNP Detail		 Chr10:60960010 Gm55864 906 bp downstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C T C C C T C C C C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245797081
MGI SNP Detail		 Chr10:60960017 Gm55864 899 bp downstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs219156559
MGI SNP Detail		 Chr10:60960131 Gm55864 785 bp downstream
Sgpl1 within coordinates of
 SNP G/T T G
rs47386489
MGI SNP Detail		 Chr10:60960393 Gm55864 523 bp downstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A G A A A A A G
rs251825037
MGI SNP Detail		 Chr10:60960569 Gm55864 347 bp downstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46857488
MGI SNP Detail		 Chr10:60960608 Gm55864 308 bp downstream
Sgpl1 within coordinates of
 SNP A/T A A A A A A T A A A T A A A T A T
rs50339273
MGI SNP Detail		 Chr10:60960619 Gm55864 297 bp downstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T C T T T T T T C T
rs213931613
MGI SNP Detail		 Chr10:60960725 Gm55864 191 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs217566668
MGI SNP Detail		 Chr10:60960736 Gm55864 180 bp downstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235664640
MGI SNP Detail		 Chr10:60960760 Gm55864 156 bp downstream
Sgpl1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs253783339
MGI SNP Detail		 Chr10:60960762 Gm55864 154 bp downstream
Sgpl1 within coordinates of
 SNP A/G G G G G G A G G G G G G G G G G G G G A G A A G G G G G G G A G G G G G G G G G A G G G A G G G G G G A G
rs232293017
MGI SNP Detail		 Chr10:60960836 Gm55864 80 bp downstream
Sgpl1 within coordinates of
 SNP C/T C T
rs251449875
MGI SNP Detail		 Chr10:60960860 Gm55864 56 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs216215199
MGI SNP Detail		 Chr10:60960887 Gm55864 29 bp downstream
Sgpl1 within coordinates of
 SNP A/G A G
rs221092795
MGI SNP Detail		 Chr10:60960924 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584011048
MGI SNP Detail		 Chr10:60960933 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T C T T T T T T T T T T
rs587477052
MGI SNP Detail		 Chr10:60960954 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581361325
MGI SNP Detail		 Chr10:60960961 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584469069
MGI SNP Detail		 Chr10:60960963 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs586964536
MGI SNP Detail		 Chr10:60960965 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580925895
MGI SNP Detail		 Chr10:60960993 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584482754
MGI SNP Detail		 Chr10:60960995 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C
rs578353312
MGI SNP Detail		 Chr10:60960997 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C C C T C
rs582977155
MGI SNP Detail		 Chr10:60960999 Gm55864 within coordinates of
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C T C C C C C C T C
rs46550883
MGI SNP Detail		 Chr10:60961255 Gm55864 241 bp upstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T C T T T T
rs51484649
MGI SNP Detail		 Chr10:60961284 Gm55864 270 bp upstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G A G G G A G G G A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228011162
MGI SNP Detail		 Chr10:60961337 Gm55864 323 bp upstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239754863
MGI SNP Detail		 Chr10:60961360 Gm55864 346 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585263732
MGI SNP Detail		 Chr10:60961376 Gm55864 362 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579179526
MGI SNP Detail		 Chr10:60961400 Gm55864 386 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265444538
MGI SNP Detail		 Chr10:60961410 Gm55864 396 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231901601
MGI SNP Detail		 Chr10:60961411 Gm55864 397 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs256651861
MGI SNP Detail		 Chr10:60961419 Gm55864 405 bp upstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs253557176
MGI SNP Detail		 Chr10:60961550 Gm55864 536 bp upstream
Sgpl1 within coordinates of
 SNP A/G A G
rs219685187
MGI SNP Detail		 Chr10:60961592 Gm55864 578 bp upstream
Sgpl1 within coordinates of
 SNP C/T C T
rs243900396
MGI SNP Detail		 Chr10:60961639 Gm55864 625 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A G A A A A A A A A A A A A G A G G A A A A A A A A A A A A A A A A A A A A G A A A G A A G A
rs217458800
MGI SNP Detail		 Chr10:60961737 Gm55864 723 bp upstream
Sgpl1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G C G G G G G G G G G G G C G G C G G G G G G C G
rs235610190
MGI SNP Detail		 Chr10:60961754 Gm55864 740 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C T C C C C C C C C C C C T T C C C C C C C C C C C C T C T C C C C C T
rs253731235
MGI SNP Detail		 Chr10:60961759 Gm55864 745 bp upstream
Sgpl1 within coordinates of
 SNP A/C C C C A C C C C C C C C C C C C A A C C C C C C C C C C C C C C C A C C C C C C A C
rs216449631
MGI SNP Detail		 Chr10:60961780 Gm55864 766 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs236852808
MGI SNP Detail		 Chr10:60961785 Gm55864 771 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A G A A A A A A A A A A A A A G G A A A A A A A A A A A A A G A A A G A A A G A A G A
rs261957475
MGI SNP Detail		 Chr10:60961814 Gm55864 800 bp upstream
Sgpl1 within coordinates of
 SNP A/G G G G G G A G G G G G G G G G G G G G A A G G G G G G G A G G G G G G G G G G G G A G G G G G G A G
rs221341054
MGI SNP Detail		 Chr10:60961830 Gm55864 816 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C T T C C C C C C C T C C C C C C C C C T C C C T C C C C C C T C
rs229940956
MGI SNP Detail		 Chr10:60961831 Gm55864 817 bp upstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
rs241723636
MGI SNP Detail		 Chr10:60961837 Gm55864 823 bp upstream
Sgpl1 within coordinates of
 SNP A/T T A
rs261830605
MGI SNP Detail		 Chr10:60961891 Gm55864 877 bp upstream
Sgpl1 within coordinates of
 SNP C/T T C
rs239744057
MGI SNP Detail		 Chr10:60961946 Gm55864 932 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263060902
MGI SNP Detail		 Chr10:60962205 Gm55864 1191 bp upstream
Sgpl1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47302517
MGI SNP Detail		 Chr10:60962228 Gm55864 1214 bp upstream
Sgpl1 within coordinates of
 SNP A/G G G G G G G G G G G A G G G G
rs49645356
MGI SNP Detail		 Chr10:60962235 Gm55864 1221 bp upstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T C T T T C T T C T C
rs244433917
MGI SNP Detail		 Chr10:60962344 Gm55864 1330 bp upstream
Sgpl1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47786930
MGI SNP Detail		 Chr10:60962366 Gm55864 1352 bp upstream
Sgpl1 within coordinates of
 SNP G/T G G G G G G T G G G T G G G T G T
rs225252452
MGI SNP Detail		 Chr10:60962428 Gm55864 1414 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46058325
MGI SNP Detail		 Chr10:60962540 Gm55864 1526 bp upstream
Sgpl1 within coordinates of
 SNP A/T A A A A A A A A A A A A A T A
rs259778042
MGI SNP Detail		 Chr10:60962740 Gm55864 1726 bp upstream
Sgpl1 within coordinates of
 SNP A/C C A
rs228492690
MGI SNP Detail		 Chr10:60962759 Gm55864 1745 bp upstream
Sgpl1 within coordinates of
 SNP G/T G T
rs51179369
MGI SNP Detail		 Chr10:60962843 Gm55864 1829 bp upstream
Sgpl1 within coordinates of
 SNP C/T T T T T T T C T T T C C T T C T C
rs215907363
MGI SNP Detail		 Chr10:60962982 Gm55864 1968 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C T C C C C C C C C C C C C C T C C C C C C T C
rs239151488
MGI SNP Detail		 Chr10:60962983 Gm55864 1969 bp upstream
Sgpl1 within coordinates of
 SNP A/G A A A A A G A A A A A A A A A A A A A G A G G A A A A A A A G A A A A A A A A A G A A A G A A A A A A G A
rs45796231
MGI SNP Detail		 Chr10:60962986 Gm55864 1972 bp upstream
Sgpl1 within coordinates of
 SNP A/T T T T T T T T T T T T A
rs250892499
MGI SNP Detail		 Chr10:60962987 Gm55864 1973 bp upstream
Sgpl1 within coordinates of
 SNP C/T C C C C C T C C C C C C C C C C C C C T C T T C C C C C C C T C C C C C C C C C T C C C T C C C C C C T C
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Showing SNP(s) 1 - 85 of 85
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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