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Mouse SNP Summary
Symbol
Name
ID
Rr3049
regulatory region 3049
MGI:6891271

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Showing SNP(s) 1 - 68 of 68

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SNP Density Heatmap
ChrX from 139,148,201 bp to 139,152,400 bp
(4,200 bp)
Show only selected strains with alleles     Show all selected strains    
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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238535574
MGI SNP Detail
ChrX:139148276 Gm15046 within coordinates of
Rr3049 1925 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258111426
MGI SNP Detail
ChrX:139148329 Gm15046 within coordinates of
Rr3049 1872 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A A T T T T T T T T T T T T T T
rs220153246
MGI SNP Detail
ChrX:139148358 Gm15046 within coordinates of
Rr3049 1843 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244847259
MGI SNP Detail
ChrX:139148404 Gm15046 within coordinates of
Rr3049 1797 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs263973684
MGI SNP Detail
ChrX:139148466 Gm15046 within coordinates of
Rr3049 1735 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs234868061
MGI SNP Detail
ChrX:139148479 Gm15046 within coordinates of
Rr3049 1722 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239158655
MGI SNP Detail
ChrX:139148491 Gm15046 within coordinates of
Rr3049 1710 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs258084515
MGI SNP Detail
ChrX:139148522 Gm15046 within coordinates of
Rr3049 1679 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227631839
MGI SNP Detail
ChrX:139148609 Gm15046 within coordinates of
Rr3049 1592 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs243949044
MGI SNP Detail
ChrX:139148662 Gm15046 within coordinates of
Rr3049 1539 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs215340183
MGI SNP Detail
ChrX:139148784 Gm15046 within coordinates of
Rr3049 1417 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs227939025
MGI SNP Detail
ChrX:139148963 Gm15046 within coordinates of
Rr3049 1238 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs254411042
MGI SNP Detail
ChrX:139148995 Gm15046 within coordinates of
Rr3049 1206 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G G A A A G A A G G G A G A A A A A A A G G A G
rs218382379
MGI SNP Detail
ChrX:139149046 Gm15046 within coordinates of
Rr3049 1155 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243389523
MGI SNP Detail
ChrX:139149143 Gm15046 within coordinates of
Rr3049 1058 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253183365
MGI SNP Detail
ChrX:139149144 Gm15046 within coordinates of
Rr3049 1057 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216324253
MGI SNP Detail
ChrX:139149180 Gm15046 within coordinates of
Rr3049 1021 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs231262828
MGI SNP Detail
ChrX:139149243 Gm15046 within coordinates of
Rr3049 958 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251701180
MGI SNP Detail
ChrX:139149262 Gm15046 within coordinates of
Rr3049 939 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G A A A G G G G G G G G G G A G A
rs219799014
MGI SNP Detail
ChrX:139149328 Gm15046 within coordinates of
Rr3049 873 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241887394
MGI SNP Detail
ChrX:139149335 Gm15046 within coordinates of
Rr3049 866 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263659722
MGI SNP Detail
ChrX:139149362 Gm15046 within coordinates of
Rr3049 839 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226515572
MGI SNP Detail
ChrX:139149427 Gm15046 within coordinates of
Rr3049 774 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239144827
MGI SNP Detail
ChrX:139149635 Gm15046 within coordinates of
Rr3049 566 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs258071537
MGI SNP Detail
ChrX:139149643 Gm15046 within coordinates of
Rr3049 558 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225297065
MGI SNP Detail
ChrX:139149691 Gm15046 within coordinates of
Rr3049 510 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G A
rs237641337
MGI SNP Detail
ChrX:139149704 Gm15046 within coordinates of
Rr3049 497 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs33879134
MGI SNP Detail
ChrX:139149754 Gm15046 within coordinates of
Rr3049 447 bp proximal
SNP G/T G G T G
rs228321592
MGI SNP Detail
ChrX:139150078 Gm15046 within coordinates of
Rr3049 123 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586881390
MGI SNP Detail
ChrX:139150108 Gm15046 within coordinates of
Rr3049 93 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29254729
MGI SNP Detail
ChrX:139150120 Gm15046 within coordinates of
Rr3049 81 bp proximal
SNP C/T C C T C C T T
rs581542577
MGI SNP Detail
ChrX:139150228 Gm15046 within coordinates of
Rr3049 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T T C C C C C C C C C C C C C C
rs229462258
MGI SNP Detail
ChrX:139150326 Gm15046 within coordinates of
Rr3049 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246812358
MGI SNP Detail
ChrX:139150498 Gm15046 within coordinates of
Rr3049 98 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216265929
MGI SNP Detail
ChrX:139150523 Gm15046 within coordinates of
Rr3049 123 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29254728
MGI SNP Detail
ChrX:139150532 Gm15046 within coordinates of
Rr3049 132 bp distal
SNP C/T C C C C C T C C T
rs262669746
MGI SNP Detail
ChrX:139150542 Gm15046 within coordinates of
Rr3049 142 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29254727
MGI SNP Detail
ChrX:139150639 Gm15046 within coordinates of
Rr3049 239 bp distal
SNP A/C A A A A A C A A A
rs211699508
MGI SNP Detail
ChrX:139150727 Gm15046 within coordinates of
Rr3049 327 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236854393
MGI SNP Detail
ChrX:139150782 Gm15046 within coordinates of
Rr3049 382 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260030660
MGI SNP Detail
ChrX:139151057 Gm15046 within coordinates of
Rr3049 657 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs226931375
MGI SNP Detail
ChrX:139151066 Gm15046 within coordinates of
Rr3049 666 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs232727698
MGI SNP Detail
ChrX:139151097 Gm15046 within coordinates of
Rr3049 697 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs251877126
MGI SNP Detail
ChrX:139151146 Gm15046 within coordinates of
Rr3049 746 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29254726
MGI SNP Detail
ChrX:139151189 Gm15046 within coordinates of
Rr3049 789 bp distal
SNP C/T T C C C
rs238322190
MGI SNP Detail
ChrX:139151200 Gm15046 within coordinates of
Rr3049 800 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29254725
MGI SNP Detail
ChrX:139151217 Gm15046 within coordinates of
Rr3049 817 bp distal
SNP C/T C C C C C C T C T
rs220456841
MGI SNP Detail
ChrX:139151234 Gm15046 within coordinates of
Rr3049 834 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29254724
MGI SNP Detail
ChrX:139151264 Gm15046 within coordinates of
Rr3049 864 bp distal
SNP G/T G G T G G G G G
rs264107356
MGI SNP Detail
ChrX:139151267 Gm15046 within coordinates of
Rr3049 867 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29254223
MGI SNP Detail
ChrX:139151293 Gm15046 within coordinates of
Rr3049 893 bp distal
SNP A/G A A G A A G A G
rs246756289
MGI SNP Detail
ChrX:139151337 Gm15046 within coordinates of
Rr3049 937 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226072376
MGI SNP Detail
ChrX:139151385 Gm15046 within coordinates of
Rr3049 985 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251833643
MGI SNP Detail
ChrX:139151440 Gm15046 within coordinates of
Rr3049 1040 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs212779392
MGI SNP Detail
ChrX:139151458 Gm15046 within coordinates of
Rr3049 1058 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235163813
MGI SNP Detail
ChrX:139151481 Gm15046 within coordinates of
Rr3049 1081 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258874763
MGI SNP Detail
ChrX:139151515 Gm15046 within coordinates of
Rr3049 1115 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29254222
MGI SNP Detail
ChrX:139151575 Gm15046 within coordinates of
Rr3049 1175 bp distal
SNP A/G A A G A A A A A
rs232625581
MGI SNP Detail
ChrX:139151686 Gm15046 within coordinates of
Rr3049 1286 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251774808
MGI SNP Detail
ChrX:139151817 Gm15046 within coordinates of
Rr3049 1417 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs219228639
MGI SNP Detail
ChrX:139151843 Gm15046 within coordinates of
Rr3049 1443 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232027232
MGI SNP Detail
ChrX:139151874 Gm15046 within coordinates of
Rr3049 1474 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255459482
MGI SNP Detail
ChrX:139151895 Gm15046 within coordinates of
Rr3049 1495 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C C C G G G G G G G G G G G G G G
rs221109483
MGI SNP Detail
ChrX:139151912 Gm15046 within coordinates of
Rr3049 1512 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29254221
MGI SNP Detail
ChrX:139151917 Gm15046 within coordinates of
Rr3049 1517 bp distal
SNP C/T T T C T T C T C
rs265953267
MGI SNP Detail
ChrX:139152057 Gm15046 within coordinates of
Rr3049 1657 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223535777
MGI SNP Detail
ChrX:139152144 Gm15046 within coordinates of
Rr3049 1744 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240663431
MGI SNP Detail
ChrX:139152305 Gm15046 within coordinates of
Rr3049 1905 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A
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Showing SNP(s) 1 - 68 of 68

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory