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Mouse SNP Summary
Symbol
Name
ID
Rr3474
regulatory region 3474
MGI:6891696

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582641834
MGI SNP Detail
ChrX:158951101 Rr3474 1900 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233926441
MGI SNP Detail
ChrX:158951118 Rr3474 1883 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242909356
MGI SNP Detail
ChrX:158951185 Rr3474 1816 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs253720982
MGI SNP Detail
ChrX:158951191 Rr3474 1810 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225862504
MGI SNP Detail
ChrX:158951197 Rr3474 1804 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs243550183
MGI SNP Detail
ChrX:158951228 Rr3474 1773 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216751343
MGI SNP Detail
ChrX:158951277 Rr3474 1724 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs239109070
MGI SNP Detail
ChrX:158951282 Rr3474 1719 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257718565
MGI SNP Detail
ChrX:158951289 Rr3474 1712 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585715092
MGI SNP Detail
ChrX:158951437 Rr3474 1564 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C G C C C C C C C G C C C C
rs580025806
MGI SNP Detail
ChrX:158951453 Rr3474 1548 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C C
rs583267818
MGI SNP Detail
ChrX:158951456 Rr3474 1545 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A A
rs587030982
MGI SNP Detail
ChrX:158951470 Rr3474 1531 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs579908529
MGI SNP Detail
ChrX:158951471 Rr3474 1530 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A
rs583271366
MGI SNP Detail
ChrX:158951481 Rr3474 1520 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A C A A A A A A A A A A A A
rs219698824
MGI SNP Detail
ChrX:158951570 Rr3474 1431 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs235826439
MGI SNP Detail
ChrX:158951571 Rr3474 1430 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250687266
MGI SNP Detail
ChrX:158951587 Rr3474 1414 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586640507
MGI SNP Detail
ChrX:158951658 Rr3474 1343 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs581717673
MGI SNP Detail
ChrX:158951659 Rr3474 1342 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585020182
MGI SNP Detail
ChrX:158951696 Rr3474 1305 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586879621
MGI SNP Detail
ChrX:158951708 Rr3474 1293 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs581382989
MGI SNP Detail
ChrX:158951709 Rr3474 1292 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584555389
MGI SNP Detail
ChrX:158951944 Rr3474 1057 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578819123
MGI SNP Detail
ChrX:158951945 Rr3474 1056 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218328936
MGI SNP Detail
ChrX:158951994 Rr3474 1007 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs582242444
MGI SNP Detail
ChrX:158952050 Rr3474 951 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233049375
MGI SNP Detail
ChrX:158952071 Rr3474 930 bp proximal
SNP A/G G G G G G A A G G G G G G G G G G A G A A G G G G A G A A G A A A G G G G G A A G G G A G G A G G A A
rs257182347
MGI SNP Detail
ChrX:158952072 Rr3474 929 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs584351944
MGI SNP Detail
ChrX:158952077 Rr3474 924 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578281593
MGI SNP Detail
ChrX:158952122 Rr3474 879 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225306060
MGI SNP Detail
ChrX:158952141 Rr3474 860 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs245267865
MGI SNP Detail
ChrX:158952148 Rr3474 853 bp proximal
SNP A/G A A A A A A G G A A A A A A A A A A G A G G A A A A G A A G A G G G A A A A A G G A A A G A A G A A G A
rs266132396
MGI SNP Detail
ChrX:158952149 Rr3474 852 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582668384
MGI SNP Detail
ChrX:158952249 Rr3474 752 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A
rs221916361
MGI SNP Detail
ChrX:158952382 Rr3474 619 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T C T T T T T T T T T T
rs236581982
MGI SNP Detail
ChrX:158952420 Rr3474 581 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29305068
MGI SNP Detail
ChrX:158952455 Rr3474 546 bp proximal
SNP A/G A A A G A A A G
rs29305067
MGI SNP Detail
ChrX:158952491 Rr3474 510 bp proximal
SNP A/G G G G G G G A G G G G G A G
rs243609703
MGI SNP Detail
ChrX:158952664 Rr3474 337 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263428753
MGI SNP Detail
ChrX:158952676 Rr3474 325 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52531819
MGI SNP Detail
ChrX:158952688 Rr3474 313 bp proximal
SNP A/T T T T T A
rs254334910
MGI SNP Detail
ChrX:158952693 Rr3474 308 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219602216
MGI SNP Detail
ChrX:158952711 Rr3474 290 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
rs235909915
MGI SNP Detail
ChrX:158952712 Rr3474 289 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C A A A A A A C A A A A A A A C A A A A
rs244566524
MGI SNP Detail
ChrX:158952713 Rr3474 288 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T A T T T T T T A T T T T T T T A T T T T
rs212325617
MGI SNP Detail
ChrX:158952860 Rr3474 141 bp proximal
Rr5628 within coordinates of
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233135511
MGI SNP Detail
ChrX:158952932 Rr3474 69 bp proximal
Rr5628 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262108445
MGI SNP Detail
ChrX:158952934 Rr3474 67 bp proximal
Rr5628 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs216850842
MGI SNP Detail
ChrX:158952935 Rr3474 66 bp proximal
Rr5628 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240091635
MGI SNP Detail
ChrX:158953015 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260915110
MGI SNP Detail
ChrX:158953054 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228678843
MGI SNP Detail
ChrX:158953087 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/G G A
rs236643709
MGI SNP Detail
ChrX:158953218 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A A
rs248103832
MGI SNP Detail
ChrX:158953226 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs219946330
MGI SNP Detail
ChrX:158953281 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586256837
MGI SNP Detail
ChrX:158953463 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580319891
MGI SNP Detail
ChrX:158953464 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242927302
MGI SNP Detail
ChrX:158953564 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs265656382
MGI SNP Detail
ChrX:158953575 Rr3474 within coordinates of
Rr5628 within coordinates of
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582598973
MGI SNP Detail
ChrX:158953601 Rr3474 1 bp distal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586067420
MGI SNP Detail
ChrX:158953605 Rr3474 5 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs231423524
MGI SNP Detail
ChrX:158953841 Rr3474 241 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs29305066
MGI SNP Detail
ChrX:158953883 Rr3474 283 bp distal
SNP C/T C C C C C C C C C C T C C T C
rs260358968
MGI SNP Detail
ChrX:158953884 Rr3474 284 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228879442
MGI SNP Detail
ChrX:158954085 Rr3474 485 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244618807
MGI SNP Detail
ChrX:158954192 Rr3474 592 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212386211
MGI SNP Detail
ChrX:158954194 Rr3474 594 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs226845506
MGI SNP Detail
ChrX:158954211 Rr3474 611 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs580080649
MGI SNP Detail
ChrX:158954583 Rr3474 983 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C
rs29305065
MGI SNP Detail
ChrX:158954716 Rr3474 1116 bp distal
SNP A/C C C C C C C C C C C C C A C
rs29305064
MGI SNP Detail
ChrX:158954864 Rr3474 1264 bp distal
SNP C/T T T T C T T C T T T C C T C T C
rs29304573
MGI SNP Detail
ChrX:158954894 Rr3474 1294 bp distal
SNP C/T T T T T T T T T T T T T T C T
rs29304572
MGI SNP Detail
ChrX:158954915 Rr3474 1315 bp distal
SNP C/T C C C C C C C C C C C C T C
rs216735038
MGI SNP Detail
ChrX:158955261 Rr3474 1661 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230735155
MGI SNP Detail
ChrX:158955270 Rr3474 1670 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs248156482
MGI SNP Detail
ChrX:158955330 Rr3474 1730 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
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Showing SNP(s) 1 - 77 of 77

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory