About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Rr5052
regulatory region 5052
MGI:6893274

<< first < prev1 next > last >>
Showing SNP(s) 1 - 53 of 53

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579803181
MGI SNP Detail		 ChrX:97724228 Ophn1 within coordinates of
Rr5052 1973 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228755677
MGI SNP Detail		 ChrX:97724332 Ophn1 within coordinates of
Rr5052 1869 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs108658987
MGI SNP Detail		 ChrX:97724366 Ophn1 within coordinates of
Rr5052 1835 bp proximal
 SNP C/T C T
rs251845920
MGI SNP Detail		 ChrX:97724372 Ophn1 within coordinates of
Rr5052 1829 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214300572
MGI SNP Detail		 ChrX:97724407 Ophn1 within coordinates of
Rr5052 1794 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs108004827
MGI SNP Detail		 ChrX:97724492 Ophn1 within coordinates of
Rr5052 1709 bp proximal
 SNP C/T T C
rs238789295
MGI SNP Detail		 ChrX:97724547 Ophn1 within coordinates of
Rr5052 1654 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108210669
MGI SNP Detail		 ChrX:97724564 Ophn1 within coordinates of
Rr5052 1637 bp proximal
 SNP A/T T T A
rs217456708
MGI SNP Detail		 ChrX:97724589 Ophn1 within coordinates of
Rr5052 1612 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs234516107
MGI SNP Detail		 ChrX:97724656 Ophn1 within coordinates of
Rr5052 1545 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs252555340
MGI SNP Detail		 ChrX:97724663 Ophn1 within coordinates of
Rr5052 1538 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221285672
MGI SNP Detail		 ChrX:97724707 Ophn1 within coordinates of
Rr5052 1494 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243978548
MGI SNP Detail		 ChrX:97724830 Ophn1 within coordinates of
Rr5052 1371 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs257797187
MGI SNP Detail		 ChrX:97724918 Ophn1 within coordinates of
Rr5052 1283 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222072095
MGI SNP Detail		 ChrX:97724937 Ophn1 within coordinates of
Rr5052 1264 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241030001
MGI SNP Detail		 ChrX:97724977 Ophn1 within coordinates of
Rr5052 1224 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs258767258
MGI SNP Detail		 ChrX:97725077 Ophn1 within coordinates of
Rr5052 1124 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs229058687
MGI SNP Detail		 ChrX:97725218 Ophn1 within coordinates of
Rr5052 983 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583220513
MGI SNP Detail		 ChrX:97725341 Ophn1 within coordinates of
Rr5052 860 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31846648
MGI SNP Detail		 ChrX:97725390 Ophn1 within coordinates of
Rr5052 811 bp proximal
 SNP A/G A A A A A A G A A A A A G A
rs264938984
MGI SNP Detail		 ChrX:97725522 Ophn1 within coordinates of
Rr5052 679 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227957447
MGI SNP Detail		 ChrX:97725582 Ophn1 within coordinates of
Rr5052 619 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs256594455
MGI SNP Detail		 ChrX:97725718 Ophn1 within coordinates of
Rr5052 483 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs214315824
MGI SNP Detail		 ChrX:97725862 Ophn1 within coordinates of
Rr5052 339 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs227883980
MGI SNP Detail		 ChrX:97725967 Ophn1 within coordinates of
Rr5052 234 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245368459
MGI SNP Detail		 ChrX:97725994 Ophn1 within coordinates of
Rr5052 207 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T C C T T T T T T C T T T T T T T C C T T T
rs217345566
MGI SNP Detail		 ChrX:97726012 Ophn1 within coordinates of
Rr5052 189 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586615437
MGI SNP Detail		 ChrX:97726098 Ophn1 within coordinates of
Rr5052 103 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238726729
MGI SNP Detail		 ChrX:97726121 Ophn1 within coordinates of
Rr5052 80 bp proximal
 SNP C/T T C
rs234556210
MGI SNP Detail		 ChrX:97726444 Ophn1 within coordinates of
Rr5052 within coordinates of
Rr8080 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249025119
MGI SNP Detail		 ChrX:97726495 Ophn1 within coordinates of
Rr5052 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213113200
MGI SNP Detail		 ChrX:97726580 Ophn1 within coordinates of
Rr5052 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A T A T T A A A A T A A A A T A A A A A A T A A A A A T T A A A
rs234592844
MGI SNP Detail		 ChrX:97726609 Ophn1 within coordinates of
Rr5052 9 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262382017
MGI SNP Detail		 ChrX:97726776 Ophn1 within coordinates of
Rr5052 176 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs222578573
MGI SNP Detail		 ChrX:97726881 Ophn1 within coordinates of
Rr5052 281 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241229516
MGI SNP Detail		 ChrX:97727009 Ophn1 within coordinates of
Rr5052 409 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs252519431
MGI SNP Detail		 ChrX:97727345 Ophn1 within coordinates of
Rr5052 745 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223138282
MGI SNP Detail		 ChrX:97727403 Ophn1 within coordinates of
Rr5052 803 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241796104
MGI SNP Detail		 ChrX:97727409 Ophn1 within coordinates of
Rr5052 809 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261808257
MGI SNP Detail		 ChrX:97727435 Ophn1 within coordinates of
Rr5052 835 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29084664
MGI SNP Detail		 ChrX:97727822 Ophn1 within coordinates of
Rr5052 1222 bp distal
 SNP A/G G G G G G G A G G G A G G A G
rs244494526
MGI SNP Detail		 ChrX:97727826 Ophn1 within coordinates of
Rr5052 1226 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs265140340
MGI SNP Detail		 ChrX:97728048 Ophn1 within coordinates of
Rr5052 1448 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227916968
MGI SNP Detail		 ChrX:97728134 Ophn1 within coordinates of
Rr5052 1534 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245578287
MGI SNP Detail		 ChrX:97728166 Ophn1 within coordinates of
Rr5052 1566 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs259945717
MGI SNP Detail		 ChrX:97728257 Ophn1 within coordinates of
Rr5052 1657 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228463675
MGI SNP Detail		 ChrX:97728441 Ophn1 within coordinates of
Rr5052 1841 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254289866
MGI SNP Detail		 ChrX:97728488 Ophn1 within coordinates of
Rr5052 1888 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C T C C C C C C C C C C
rs212239824
MGI SNP Detail		 ChrX:97728489 Ophn1 within coordinates of
Rr5052 1889 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239162927
MGI SNP Detail		 ChrX:97728494 Ophn1 within coordinates of
Rr5052 1894 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T T T T T C T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251428448
MGI SNP Detail		 ChrX:97728496 Ophn1 within coordinates of
Rr5052 1896 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214012409
MGI SNP Detail		 ChrX:97728524 Ophn1 within coordinates of
Rr5052 1924 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585410867
MGI SNP Detail		 ChrX:97728551 Ophn1 within coordinates of
Rr5052 1951 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 53 of 53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...