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Mouse SNP Summary
Symbol
Name
ID 		Rr5948
regulatory region 5948
MGI:6894170

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233851352
MGI SNP Detail		 ChrX:51458465 Gpc3 within coordinates of
Rr5948 1936 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251445864
MGI SNP Detail		 ChrX:51458586 Gpc3 within coordinates of
Rr5948 1815 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
rs227626012
MGI SNP Detail		 ChrX:51458692 Gpc3 within coordinates of
Rr5948 1709 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T C T T T T T T T T T T T
rs239845887
MGI SNP Detail		 ChrX:51458695 Gpc3 within coordinates of
Rr5948 1706 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T C T T T T T T T T T T T T
rs30359466
MGI SNP Detail		 ChrX:51458719 Gpc3 within coordinates of
Rr5948 1682 bp proximal
 SNP A/G A A A A A A A A G A A A A A A
rs261615972
MGI SNP Detail		 ChrX:51459051 Gpc3 within coordinates of
Rr5948 1350 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs30359469
MGI SNP Detail		 ChrX:51459307 Gpc3 within coordinates of
Rr4205 within coordinates of
Rr5948 1094 bp proximal
 SNP A/C A A A A A A A A A A C A A C A
rs239766275
MGI SNP Detail		 ChrX:51459490 Gpc3 within coordinates of
Rr4205 within coordinates of
Rr5948 911 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30359472
MGI SNP Detail		 ChrX:51459748 Gpc3 within coordinates of
Rr5948 653 bp proximal
 SNP A/C C C C C C C C C C C A C C A C
rs30360295
MGI SNP Detail		 ChrX:51459750 Gpc3 within coordinates of
Rr5948 651 bp proximal
 SNP A/T A A A A A A T A A A A A A A
rs30360297
MGI SNP Detail		 ChrX:51459777 Gpc3 within coordinates of
Rr5948 624 bp proximal
 SNP C/T T T T T T T C T T T C T T C T
rs264351755
MGI SNP Detail		 ChrX:51459812 Gpc3 within coordinates of
Rr5948 589 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs30360299
MGI SNP Detail		 ChrX:51459914 Gpc3 within coordinates of
Rr5948 487 bp proximal
 SNP A/G A A A A A A G A A A G A A G A
rs249909790
MGI SNP Detail		 ChrX:51459964 Gpc3 within coordinates of
Rr5948 437 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30360301
MGI SNP Detail		 ChrX:51459975 Gpc3 within coordinates of
Rr5948 426 bp proximal
 SNP C/T T T T T T T C T T T C T T C T
rs230664275
MGI SNP Detail		 ChrX:51459996 Gpc3 within coordinates of
Rr5948 405 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30360303
MGI SNP Detail		 ChrX:51460078 Gpc3 within coordinates of
Rr5948 323 bp proximal
 SNP A/G G G G G G G A G G G A G G A G
rs30361226
MGI SNP Detail		 ChrX:51460116 Gpc3 within coordinates of
Rr5948 285 bp proximal
 SNP A/C C C C C C C C C A C C C C C C
rs215721566
MGI SNP Detail		 ChrX:51460157 Gpc3 within coordinates of
Rr5948 244 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs232612008
MGI SNP Detail		 ChrX:51460318 Gpc3 within coordinates of
Rr5948 83 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs245537482
MGI SNP Detail		 ChrX:51460408 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs219561973
MGI SNP Detail		 ChrX:51460452 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs242392833
MGI SNP Detail		 ChrX:51460454 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs256693014
MGI SNP Detail		 ChrX:51460467 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs220544464
MGI SNP Detail		 ChrX:51460558 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232992408
MGI SNP Detail		 ChrX:51460717 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30361229
MGI SNP Detail		 ChrX:51460780 Gpc3 within coordinates of
Rr5948 within coordinates of
 SNP A/G G G G G G G A G G G A G G A G
rs222069210
MGI SNP Detail		 ChrX:51460885 Gpc3 within coordinates of
Rr5948 85 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240659273
MGI SNP Detail		 ChrX:51460898 Gpc3 within coordinates of
Rr5948 98 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266183939
MGI SNP Detail		 ChrX:51460905 Gpc3 within coordinates of
Rr5948 105 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs225662511
MGI SNP Detail		 ChrX:51460908 Gpc3 within coordinates of
Rr5948 108 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244880948
MGI SNP Detail		 ChrX:51461040 Gpc3 within coordinates of
Rr5948 240 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs261515859
MGI SNP Detail		 ChrX:51461057 Gpc3 within coordinates of
Rr5948 257 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs226019432
MGI SNP Detail		 ChrX:51461065 Gpc3 within coordinates of
Rr5948 265 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs237184411
MGI SNP Detail		 ChrX:51461154 Gpc3 within coordinates of
Rr5948 354 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257719415
MGI SNP Detail		 ChrX:51461162 Gpc3 within coordinates of
Rr5948 362 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs226644614
MGI SNP Detail		 ChrX:51461288 Gpc3 within coordinates of
Rr5948 488 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254526299
MGI SNP Detail		 ChrX:51461507 Gpc3 within coordinates of
Rr5948 707 bp distal
Rr5949 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs217797721
MGI SNP Detail		 ChrX:51461598 Gpc3 within coordinates of
Rr5948 798 bp distal
Rr5949 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233411978
MGI SNP Detail		 ChrX:51461650 Gpc3 within coordinates of
Rr5948 850 bp distal
Rr5949 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254519115
MGI SNP Detail		 ChrX:51461703 Gpc3 within coordinates of
Rr5948 903 bp distal
Rr5949 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30361232
MGI SNP Detail		 ChrX:51461725 Gpc3 within coordinates of
Rr5948 925 bp distal
Rr5949 within coordinates of
 SNP G/T G G G G G G T G G G G G G G G
rs30361985
MGI SNP Detail		 ChrX:51461762 Gpc3 within coordinates of
Rr5948 962 bp distal
Rr5949 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs251301177
MGI SNP Detail		 ChrX:51461818 Gpc3 within coordinates of
Rr5948 1018 bp distal
Rr5949 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216019960
MGI SNP Detail		 ChrX:51461819 Gpc3 within coordinates of
Rr5948 1019 bp distal
Rr5949 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30361988
MGI SNP Detail		 ChrX:51461884 Gpc3 within coordinates of
Rr5948 1084 bp distal
Rr5949 within coordinates of
 SNP A/C C C C C C C C C C C A C C A C
rs581274123
MGI SNP Detail		 ChrX:51462180 Gpc3 within coordinates of
Rr5948 1380 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261059261
MGI SNP Detail		 ChrX:51462206 Gpc3 within coordinates of
Rr5948 1406 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs226383842
MGI SNP Detail		 ChrX:51462223 Gpc3 within coordinates of
Rr5948 1423 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581787161
MGI SNP Detail		 ChrX:51462388 Gpc3 within coordinates of
Rr5948 1588 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584383184
MGI SNP Detail		 ChrX:51462389 Gpc3 within coordinates of
Rr5948 1589 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242057713
MGI SNP Detail		 ChrX:51462415 Gpc3 within coordinates of
Rr5948 1615 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260749029
MGI SNP Detail		 ChrX:51462510 Gpc3 within coordinates of
Rr5948 1710 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220032281
MGI SNP Detail		 ChrX:51462514 Gpc3 within coordinates of
Rr5948 1714 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237506286
MGI SNP Detail		 ChrX:51462517 Gpc3 within coordinates of
Rr5948 1717 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs258053174
MGI SNP Detail		 ChrX:51462519 Gpc3 within coordinates of
Rr5948 1719 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs30361991
MGI SNP Detail		 ChrX:51462577 Gpc3 within coordinates of
Rr5948 1777 bp distal
 SNP A/G A A A A A A A A A A G A A G A
rs250758388
MGI SNP Detail		 ChrX:51462591 Gpc3 within coordinates of
Rr5948 1791 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs263925751
MGI SNP Detail		 ChrX:51462601 Gpc3 within coordinates of
Rr5948 1801 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs228915909
MGI SNP Detail		 ChrX:51462622 Gpc3 within coordinates of
Rr5948 1822 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578377944
MGI SNP Detail		 ChrX:51462740 Gpc3 within coordinates of
Rr5948 1940 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs250162676
MGI SNP Detail		 ChrX:51462794 Gpc3 within coordinates of
Rr5948 1994 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
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Showing SNP(s) 1 - 62 of 62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory