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Mouse SNP Summary
Symbol
Name
ID
Rr10542
regulatory region 10542
MGI:6898764

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29301687
MGI SNP Detail
ChrX:153925769 Rr10542 1984 bp proximal
SNP A/G A A A A A A G A A A A A A A
rs29301686
MGI SNP Detail
ChrX:153925848 Rr10542 1905 bp proximal
SNP A/T T A A T T T T T T T A T A
rs215121022
MGI SNP Detail
ChrX:153925899 Rr10542 1854 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs29301685
MGI SNP Detail
ChrX:153925979 Rr10542 1774 bp proximal
SNP A/G G A G A G G G A G G G A A G A A
rs254818530
MGI SNP Detail
ChrX:153925988 Rr10542 1765 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29301684
MGI SNP Detail
ChrX:153926068 Rr10542 1685 bp proximal
SNP A/T A A A A A A T A A A A A A A A
rs235612051
MGI SNP Detail
ChrX:153926084 Rr10542 1669 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249763622
MGI SNP Detail
ChrX:153926090 Rr10542 1663 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs220564460
MGI SNP Detail
ChrX:153926096 Rr10542 1657 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232075342
MGI SNP Detail
ChrX:153926117 Rr10542 1636 bp proximal
SNP A/C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253960371
MGI SNP Detail
ChrX:153926130 Rr10542 1623 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224516793
MGI SNP Detail
ChrX:153926141 Rr10542 1612 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580431508
MGI SNP Detail
ChrX:153926273 Rr10542 1480 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C
rs587439278
MGI SNP Detail
ChrX:153926302 Rr10542 1451 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581329031
MGI SNP Detail
ChrX:153926357 Rr10542 1396 bp proximal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs583633381
MGI SNP Detail
ChrX:153926366 Rr10542 1387 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs251857790
MGI SNP Detail
ChrX:153926510 Rr10542 1243 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs33870547
MGI SNP Detail
ChrX:153926635 Rr10542 1118 bp proximal
SNP A/G A A G
rs587554348
MGI SNP Detail
ChrX:153926672 Rr10542 1081 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G
rs581571323
MGI SNP Detail
ChrX:153926690 Rr10542 1063 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs584135353
MGI SNP Detail
ChrX:153926808 Rr10542 945 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs220656176
MGI SNP Detail
ChrX:153926851 Rr10542 902 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235720665
MGI SNP Detail
ChrX:153926877 Rr10542 876 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs578354575
MGI SNP Detail
ChrX:153926987 Rr10542 766 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256016434
MGI SNP Detail
ChrX:153927004 Rr10542 749 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225158334
MGI SNP Detail
ChrX:153927031 Rr10542 722 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245824636
MGI SNP Detail
ChrX:153927058 Rr10542 695 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265468935
MGI SNP Detail
ChrX:153927143 Rr10542 610 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs29301293
MGI SNP Detail
ChrX:153927217 Rr10542 536 bp proximal
SNP A/G G G G G G G G G G G A G G G G
rs233883131
MGI SNP Detail
ChrX:153927314 Rr10542 439 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259204894
MGI SNP Detail
ChrX:153927512 Rr10542 241 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29301292
MGI SNP Detail
ChrX:153927557 Rr10542 196 bp proximal
SNP C/G C C C C C C G C C C C C C C C
rs29301291
MGI SNP Detail
ChrX:153927577 Rr10542 176 bp proximal
SNP A/G A A A A A A G A A A A A A A A
rs243704184
MGI SNP Detail
ChrX:153927586 Rr10542 167 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214528156
MGI SNP Detail
ChrX:153927635 Rr10542 118 bp proximal
Rr3369 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29301290
MGI SNP Detail
ChrX:153927648 Rr10542 105 bp proximal
Rr3369 within coordinates of
SNP A/G G A ? G A G G A G G G A A G A A
rs253901019
MGI SNP Detail
ChrX:153927733 Rr10542 20 bp proximal
Rr3369 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224529346
MGI SNP Detail
ChrX:153927785 Rr10542 within coordinates of
Rr3369 within coordinates of
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs29301289
MGI SNP Detail
ChrX:153927821 Rr10542 within coordinates of
Rr3369 within coordinates of
SNP A/G A G A G A A A A A A A A G A A G
rs263968263
MGI SNP Detail
ChrX:153927993 Rr10542 within coordinates of
Rr3369 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29301288
MGI SNP Detail
ChrX:153928130 Rr10542 37 bp distal
Rr3369 within coordinates of
SNP C/G C C C C C C G C C C C C C C C
rs29301287
MGI SNP Detail
ChrX:153928217 Rr10542 124 bp distal
SNP C/T C C C C C C T C C C C C C C C
rs29301286
MGI SNP Detail
ChrX:153928386 Rr10542 293 bp distal
SNP C/T C C C C C C T C C C T C C T C
rs219221802
MGI SNP Detail
ChrX:153928617 Rr10542 524 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29301285
MGI SNP Detail
ChrX:153928635 Rr10542 542 bp distal
SNP A/T A A A A A A A A A A T A A T A
rs263130688
MGI SNP Detail
ChrX:153928667 Rr10542 574 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G C G G C G G G G G G G G G G G G
rs234825043
MGI SNP Detail
ChrX:153928670 Rr10542 577 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G A G G A G G G G G G G A G G G G
rs247439974
MGI SNP Detail
ChrX:153928710 Rr10542 617 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs264847932
MGI SNP Detail
ChrX:153928788 Rr10542 695 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225049465
MGI SNP Detail
ChrX:153928931 Rr10542 838 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C A C C A C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29301284
MGI SNP Detail
ChrX:153928935 Rr10542 842 bp distal
SNP A/G A A A G A A A G G
rs29300923
MGI SNP Detail
ChrX:153928944 Rr10542 851 bp distal
SNP A/G G A A G A G G G G G G G A G G
rs225997532
MGI SNP Detail
ChrX:153928990 Rr10542 897 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs258449375
MGI SNP Detail
ChrX:153929074 Rr10542 981 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216092473
MGI SNP Detail
ChrX:153929077 Rr10542 984 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31257959
MGI SNP Detail
ChrX:153929228 Rr10542 1135 bp distal
SNP C/T T C C
rs29300922
MGI SNP Detail
ChrX:153929238 Rr10542 1145 bp distal
SNP A/G A G A G A A A G A A A G A
rs213653433
MGI SNP Detail
ChrX:153929240 Rr10542 1147 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230331554
MGI SNP Detail
ChrX:153929255 Rr10542 1162 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A G A A G A A A A A A A G A A A A
rs250221633
MGI SNP Detail
ChrX:153929266 Rr10542 1173 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T C T T C T T T T T T T C T T T T
rs29300921
MGI SNP Detail
ChrX:153929281 Rr10542 1188 bp distal
SNP C/G G G G G G C G G G G G G G
rs29300920
MGI SNP Detail
ChrX:153929283 Rr10542 1190 bp distal
SNP A/T T A T A T T T T T T A T T A
rs262754825
MGI SNP Detail
ChrX:153929311 Rr10542 1218 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs226587799
MGI SNP Detail
ChrX:153929316 Rr10542 1223 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C
rs29300919
MGI SNP Detail
ChrX:153929366 Rr10542 1273 bp distal
SNP C/T T T T T T T T T T T C T T C T
rs261934825
MGI SNP Detail
ChrX:153929437 Rr10542 1344 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T A T T T T T T T A T T T T
rs224228315
MGI SNP Detail
ChrX:153929456 Rr10542 1363 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29300918
MGI SNP Detail
ChrX:153929496 Rr10542 1403 bp distal
SNP A/T T T T T T T T T T T A T T A T
rs29300917
MGI SNP Detail
ChrX:153929509 Rr10542 1416 bp distal
SNP C/T C C C C C C T C C C T C C T C
rs225824248
MGI SNP Detail
ChrX:153929576 Rr10542 1483 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29300916
MGI SNP Detail
ChrX:153929617 Rr10542 1524 bp distal
SNP C/T C C C C C C C C C C T C C T C
rs216347266
MGI SNP Detail
ChrX:153929734 Rr10542 1641 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234132053
MGI SNP Detail
ChrX:153929792 Rr10542 1699 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T C T T C T T T T T T T C T T T T
rs259556818
MGI SNP Detail
ChrX:153929828 Rr10542 1735 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T C T T C T T T T T T T C T T T T
rs213170994
MGI SNP Detail
ChrX:153929830 Rr10542 1737 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230360858
MGI SNP Detail
ChrX:153929848 Rr10542 1755 bp distal
SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250831991
MGI SNP Detail
ChrX:153929850 Rr10542 1757 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C T C C T C C C C C C C T C C C C
rs29300915
MGI SNP Detail
ChrX:153929861 Rr10542 1768 bp distal
SNP A/G A A A A A A G A A A G A A G A
rs29300914
MGI SNP Detail
ChrX:153930037 Rr10542 1944 bp distal
SNP A/G A A A G A A G A G A
rs258429366
MGI SNP Detail
ChrX:153930046 Rr10542 1953 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 80 of 80

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory