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Mouse SNP Summary
Symbol
Name
ID 		Rr272070
regulatory region 272070
MGI:7160292

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236169486
MGI SNP Detail		 Chr13:46087223 Atxn1 within coordinates of
Rr272070 1978 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48296986
MGI SNP Detail		 Chr13:46087334 Atxn1 within coordinates of
Rr272070 1867 bp proximal
Rr283773 within coordinates of
 SNP A A A A
rs48416987
MGI SNP Detail		 Chr13:46087402 Atxn1 within coordinates of
Rr272070 1799 bp proximal
Rr283773 within coordinates of
 SNP C C C C
rs231075496
MGI SNP Detail		 Chr13:46087439 Atxn1 within coordinates of
Rr272070 1762 bp proximal
Rr283773 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs580022350
MGI SNP Detail		 Chr13:46087476 Atxn1 within coordinates of
Rr272070 1725 bp proximal
Rr283773 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46595651
MGI SNP Detail		 Chr13:46087535 Atxn1 within coordinates of
Rr272070 1666 bp proximal
Rr283773 within coordinates of
 SNP A A A A
rs223758950
MGI SNP Detail		 Chr13:46087536 Atxn1 within coordinates of
Rr272070 1665 bp proximal
Rr283773 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50126131
MGI SNP Detail		 Chr13:46087615 Atxn1 within coordinates of
Rr272070 1586 bp proximal
Rr283773 within coordinates of
 SNP T T T T T T
rs259619043
MGI SNP Detail		 Chr13:46087767 Atxn1 within coordinates of
Rr272070 1434 bp proximal
Rr283773 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29226447
MGI SNP Detail		 Chr13:46087882 Atxn1 within coordinates of
Rr272070 1319 bp proximal
Rr283773 within coordinates of
 SNP C/T T T C T T T
rs241732683
MGI SNP Detail		 Chr13:46087887 Atxn1 within coordinates of
Rr272070 1314 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259043349
MGI SNP Detail		 Chr13:46087907 Atxn1 within coordinates of
Rr272070 1294 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs218763583
MGI SNP Detail		 Chr13:46087935 Atxn1 within coordinates of
Rr272070 1266 bp proximal
Rr283773 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C A C
rs241152186
MGI SNP Detail		 Chr13:46088042 Atxn1 within coordinates of
Rr272070 1159 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265286158
MGI SNP Detail		 Chr13:46088076 Atxn1 within coordinates of
Rr272070 1125 bp proximal
Rr283773 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229709154
MGI SNP Detail		 Chr13:46088202 Atxn1 within coordinates of
Rr272070 999 bp proximal
Rr283773 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G G G G G G G G G C G G G G
rs258041574
MGI SNP Detail		 Chr13:46088203 Atxn1 within coordinates of
Rr272070 998 bp proximal
Rr283773 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs49508826
MGI SNP Detail		 Chr13:46088290 Atxn1 within coordinates of
Rr272070 911 bp proximal
Rr283773 within coordinates of
 SNP A A A A A
rs228986201
MGI SNP Detail		 Chr13:46088300 Atxn1 within coordinates of
Rr272070 901 bp proximal
Rr283773 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247798122
MGI SNP Detail		 Chr13:46088401 Atxn1 within coordinates of
Rr272070 800 bp proximal
Rr283773 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212538546
MGI SNP Detail		 Chr13:46088402 Atxn1 within coordinates of
Rr272070 799 bp proximal
Rr283773 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs227803135
MGI SNP Detail		 Chr13:46088448 Atxn1 within coordinates of
Rr272070 753 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46531979
MGI SNP Detail		 Chr13:46088467 Atxn1 within coordinates of
Rr272070 734 bp proximal
Rr283773 within coordinates of
 SNP T T T T T T
rs215689707
MGI SNP Detail		 Chr13:46088598 Atxn1 within coordinates of
Rr272070 603 bp proximal
Rr283773 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236578650
MGI SNP Detail		 Chr13:46089004 Atxn1 within coordinates of
Rr272070 197 bp proximal
Rr283773 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252166408
MGI SNP Detail		 Chr13:46089040 Atxn1 within coordinates of
Rr272070 161 bp proximal
Rr283773 within coordinates of
 SNP C/T T T T C C C C C C T C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215459854
MGI SNP Detail		 Chr13:46089050 Atxn1 within coordinates of
Rr272070 151 bp proximal
Rr283773 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235340632
MGI SNP Detail		 Chr13:46089058 Atxn1 within coordinates of
Rr272070 143 bp proximal
Rr283773 within coordinates of
 SNP A/G G G G A A A A A A G A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
rs252781206
MGI SNP Detail		 Chr13:46089154 Atxn1 within coordinates of
Rr272070 47 bp proximal
Rr283773 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29248155
MGI SNP Detail		 Chr13:46089188 Atxn1 within coordinates of
Rr272070 13 bp proximal
Rr283773 within coordinates of
 SNP A/T T A A A
rs244156223
MGI SNP Detail		 Chr13:46089275 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29232823
MGI SNP Detail		 Chr13:46089285 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP A/C A C C C
rs29566400
MGI SNP Detail		 Chr13:46089351 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP A/G G G A G G G
rs246399093
MGI SNP Detail		 Chr13:46089368 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs586302522
MGI SNP Detail		 Chr13:46089384 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258936383
MGI SNP Detail		 Chr13:46089436 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229153300
MGI SNP Detail		 Chr13:46089465 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241792878
MGI SNP Detail		 Chr13:46089477 Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256588663
MGI SNP Detail		 Chr13:46089507 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29252015
MGI SNP Detail		 Chr13:46089593 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 within coordinates of
 SNP A/G G A A
rs255827193
MGI SNP Detail		 Chr13:46089624 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 24 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs581476907
MGI SNP Detail		 Chr13:46089663 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 63 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs213383512
MGI SNP Detail		 Chr13:46089709 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 109 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs230611120
MGI SNP Detail		 Chr13:46089830 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 230 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs29637079
MGI SNP Detail		 Chr13:46089890 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 290 bp distal
 SNP A/G A G G G
rs29513211
MGI SNP Detail		 Chr13:46089983 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 383 bp distal
 SNP G/T G G T T
rs235452722
MGI SNP Detail		 Chr13:46090013 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 413 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252737803
MGI SNP Detail		 Chr13:46090015 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 415 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29635793
MGI SNP Detail		 Chr13:46090131 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 531 bp distal
 SNP A/C A A C C C
rs29831388
MGI SNP Detail		 Chr13:46090177 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 577 bp distal
 SNP C/T T T C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262464655
MGI SNP Detail		 Chr13:46090211 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 611 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29819985
MGI SNP Detail		 Chr13:46090218 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 618 bp distal
 SNP A/T A A T T T
rs584877375
MGI SNP Detail		 Chr13:46090243 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 643 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29726095
MGI SNP Detail		 Chr13:46090251 4930453C13Rik within coordinates of
Atxn1 within coordinates of
Rr272070 651 bp distal
 SNP A/G G G A A A
rs29710156
MGI SNP Detail		 Chr13:46090538 Atxn1 within coordinates of
Rr272070 938 bp distal
 SNP C/T T C C
rs252859568
MGI SNP Detail		 Chr13:46090564 Atxn1 within coordinates of
Rr272070 964 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29235556
MGI SNP Detail		 Chr13:46090569 Atxn1 within coordinates of
Rr272070 969 bp distal
 SNP A/C A C C C
rs241916855
MGI SNP Detail		 Chr13:46090580 Atxn1 within coordinates of
Rr272070 980 bp distal
 SNP A/G A A G G G G G G A G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G A G G G G
rs256679504
MGI SNP Detail		 Chr13:46090632 Atxn1 within coordinates of
Rr272070 1032 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs227827920
MGI SNP Detail		 Chr13:46090748 Atxn1 within coordinates of
Rr272070 1148 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243862427
MGI SNP Detail		 Chr13:46090761 Atxn1 within coordinates of
Rr272070 1161 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264982372
MGI SNP Detail		 Chr13:46090819 Atxn1 within coordinates of
Rr272070 1219 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232125852
MGI SNP Detail		 Chr13:46090828 Atxn1 within coordinates of
Rr272070 1228 bp distal
 SNP C/T C C C T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
rs246294110
MGI SNP Detail		 Chr13:46090857 Atxn1 within coordinates of
Rr272070 1257 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A A A A A A A A A
rs257678668
MGI SNP Detail		 Chr13:46090936 Atxn1 within coordinates of
Rr272070 1336 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229576014
MGI SNP Detail		 Chr13:46090948 Atxn1 within coordinates of
Rr272070 1348 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A A A A A A A A A G A A A A
rs581327108
MGI SNP Detail		 Chr13:46091167 Atxn1 within coordinates of
Rr272070 1567 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G
rs222084339
MGI SNP Detail		 Chr13:46091207 Atxn1 within coordinates of
Rr272070 1607 bp distal
 SNP A/G A G
rs244455784
MGI SNP Detail		 Chr13:46091212 Atxn1 within coordinates of
Rr272070 1612 bp distal
 SNP A/G A G
rs246921557
MGI SNP Detail		 Chr13:46091324 Atxn1 within coordinates of
Rr272070 1724 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213112420
MGI SNP Detail		 Chr13:46091338 Atxn1 within coordinates of
Rr272070 1738 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C C C C C C C C C T C C C C
rs236430505
MGI SNP Detail		 Chr13:46091391 Atxn1 within coordinates of
Rr272070 1791 bp distal
 SNP G/T G G G T T T T T T G T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T T T T T T G T T G T T T T
rs251718145
MGI SNP Detail		 Chr13:46091467 Atxn1 within coordinates of
Rr272070 1867 bp distal
 SNP C/G C C C G G G G G G C G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G G G G G G G G G C G G G G
rs214293702
MGI SNP Detail		 Chr13:46091476 Atxn1 within coordinates of
Rr272070 1876 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory