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Mouse SNP Summary
Symbol
Name
ID 		Rr396084
regulatory region 396084
MGI:7692196

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238942537
MGI SNP Detail		 Chr1:65223608 Idh1 within coordinates of
Rr396084 1999 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G C C G C G G G G G G G G G G G G
rs265391784
MGI SNP Detail		 Chr1:65223628 Idh1 within coordinates of
Rr396084 1979 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228075085
MGI SNP Detail		 Chr1:65223634 Idh1 within coordinates of
Rr396084 1973 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G C C G C G G G G G G G C G G G C
rs254560898
MGI SNP Detail		 Chr1:65223659 Idh1 within coordinates of
Rr396084 1948 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264144327
MGI SNP Detail		 Chr1:65223675 Idh1 within coordinates of
Rr396084 1932 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A G G A G A A A A A A A G A A A A
rs235279801
MGI SNP Detail		 Chr1:65223708 Idh1 within coordinates of
Rr396084 1899 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247251995
MGI SNP Detail		 Chr1:65223716 Idh1 within coordinates of
Rr396084 1891 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214975390
MGI SNP Detail		 Chr1:65223741 Idh1 within coordinates of
Rr396084 1866 bp upstream
 SNP C/T T T T C T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C T T T T C T C T T T C T T
rs31479743
MGI SNP Detail		 Chr1:65223753 Idh1 within coordinates of
Rr396084 1854 bp upstream
 SNP A/G A A A A G A G
rs586949516
MGI SNP Detail		 Chr1:65223803 Idh1 within coordinates of
Rr396084 1804 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs581077645
MGI SNP Detail		 Chr1:65223825 Idh1 within coordinates of
Rr396084 1782 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs243479416
MGI SNP Detail		 Chr1:65223859 Idh1 within coordinates of
Rr396084 1748 bp upstream
 SNP C/T C C C C T C C C C T C C C C C C C C C T C C C C C C C C C C C C C T C T C C C T C C C C T C T C C C T C C
rs584463332
MGI SNP Detail		 Chr1:65223875 Idh1 within coordinates of
Rr396084 1732 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs215122216
MGI SNP Detail		 Chr1:65223907 Idh1 within coordinates of
Rr396084 1700 bp upstream
 SNP C/T C C C C T C C C C T C C C C C C C C C T C C C C C C C C C C C C C T C T C C C T C C C C T C T C C C T C C
rs234615748
MGI SNP Detail		 Chr1:65223925 Idh1 within coordinates of
Rr396084 1682 bp upstream
 SNP A/C A A A A C A A A A C A A A A A A A A A C A A C A A A A A A A A A A C A C A A A C C A A A C A C A C A C A C
rs261514560
MGI SNP Detail		 Chr1:65223940 Idh1 within coordinates of
Rr396084 1667 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A A G G G G G G G G G G G G G G
rs225660283
MGI SNP Detail		 Chr1:65223971 Idh1 within coordinates of
Rr396084 1636 bp upstream
 SNP A/G G G G G A G G G G A G G G G G G G G G A G G A G G G G A G G G G G A G A G A A A A G G G A G A G A G A G A
rs236256329
MGI SNP Detail		 Chr1:65224014 Idh1 within coordinates of
Rr396084 1593 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32413619
MGI SNP Detail		 Chr1:65224050 Idh1 within coordinates of
Rr396084 1557 bp upstream
 SNP A/G A A A A G A G
rs222007221
MGI SNP Detail		 Chr1:65224116 Idh1 within coordinates of
Rr396084 1491 bp upstream
 SNP C/G/T G G G G T G G G G T G G G G G G G G G C G G G G G G G G G G G G G C G T G G G T G G G G T G T G G G T G G
rs238963959
MGI SNP Detail		 Chr1:65224192 Idh1 within coordinates of
Rr396084 1415 bp upstream
 SNP A/G G G G G A G G G G A G G G G G G G G G A G G G G G G G G G G G G G A G A G G G A G G G G A G A G A G A G G
rs581324594
MGI SNP Detail		 Chr1:65224200 Idh1 within coordinates of
Rr396084 1407 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs262799854
MGI SNP Detail		 Chr1:65224201 Idh1 within coordinates of
Rr396084 1406 bp upstream
 SNP A/G G G G G A G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G A G A G G G A G G
rs220576472
MGI SNP Detail		 Chr1:65224288 Idh1 within coordinates of
Rr396084 1319 bp upstream
 SNP A/G G G G G A G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G A G A G G G A G G
rs242667218
MGI SNP Detail		 Chr1:65224385 Idh1 within coordinates of
Rr396084 1222 bp upstream
 SNP G/T G G G G T G G G G T G G G G G G G G G T G G G G G G G G G G G G G T G T G G G T G G G G T G T G T G T G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs266018911
MGI SNP Detail		 Chr1:65224396 Idh1 within coordinates of
Rr396084 1211 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229519165
MGI SNP Detail		 Chr1:65224412 Idh1 within coordinates of
Rr396084 1195 bp upstream
 SNP C/T T T T T C T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T C T C C C C T T T C T C T C T C T C
rs245508773
MGI SNP Detail		 Chr1:65224448 Idh1 within coordinates of
Rr396084 1159 bp upstream
 SNP C/T C C C C T C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C T C T C C C T C C
rs256982838
MGI SNP Detail		 Chr1:65224464 Idh1 within coordinates of
Rr396084 1143 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs227320257
MGI SNP Detail		 Chr1:65224516 Idh1 within coordinates of
Rr396084 1091 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243539169
MGI SNP Detail		 Chr1:65224568 Idh1 within coordinates of
Rr396084 1039 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214427393
MGI SNP Detail		 Chr1:65224618 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 989 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235834179
MGI SNP Detail		 Chr1:65224669 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 938 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31475387
MGI SNP Detail		 Chr1:65224696 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 911 bp upstream
 SNP A/T T T T A T A
rs218071483
MGI SNP Detail		 Chr1:65224710 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 897 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236266902
MGI SNP Detail		 Chr1:65224722 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 885 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252630810
MGI SNP Detail		 Chr1:65224774 Idh1 within coordinates of
Rr17109 within coordinates of
Rr396084 833 bp upstream
 SNP C/T T T T T C T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T C T C C C C T T T C T C T C T C T T
rs216097289
MGI SNP Detail		 Chr1:65224814 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 793 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T C C T C T T T T T T T C T T T T
rs231926384
MGI SNP Detail		 Chr1:65224830 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 777 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T C T T T T T T C T T T T T T T C T T T T
rs262539845
MGI SNP Detail		 Chr1:65224843 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 764 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs582545830
MGI SNP Detail		 Chr1:65224971 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 636 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs220545400
MGI SNP Detail		 Chr1:65225193 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 414 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245114979
MGI SNP Detail		 Chr1:65225227 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 380 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A G G A G A A A A A A A G A A A A
rs260590220
MGI SNP Detail		 Chr1:65225233 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 374 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A G G A G A A A A A A A G A A A A
rs223048389
MGI SNP Detail		 Chr1:65225234 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 373 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T C C T C T T T T T T T C T T T T
rs239507362
MGI SNP Detail		 Chr1:65225278 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 329 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A G G A G A A A A A A A A A A A A
rs579351058
MGI SNP Detail		 Chr1:65225297 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 310 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs258365967
MGI SNP Detail		 Chr1:65225298 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 309 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225581754
MGI SNP Detail		 Chr1:65225307 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 300 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A C C A C A A A A A A A C A A A A
rs242889571
MGI SNP Detail		 Chr1:65225391 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 216 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265224034
MGI SNP Detail		 Chr1:65225393 Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 214 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227339334
MGI SNP Detail		 Chr1:65225456 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 151 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253493819
MGI SNP Detail		 Chr1:65225473 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 134 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C T T C T C C C C C C C C C C C C
rs216667416
MGI SNP Detail		 Chr1:65225530 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 77 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229175852
MGI SNP Detail		 Chr1:65225531 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 76 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252233942
MGI SNP Detail		 Chr1:65225589 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 18 bp upstream
 SNP A/C C A
rs215826051
MGI SNP Detail		 Chr1:65225605 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 2 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A G G A G A A A A A A A A A A A
rs581878643
MGI SNP Detail		 Chr1:65225610 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs231537132
MGI SNP Detail		 Chr1:65225615 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
Tssr11995 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C G G C C C C C C C C C C C C C
rs258081473
MGI SNP Detail		 Chr1:65225634 Cpgi333 within coordinates of
Idh1 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
Tssr11995 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs235518817
MGI SNP Detail		 Chr1:65225665 Cpgi333 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
 SNP A/G A A A A G A A A G A A A A
rs582168024
MGI SNP Detail		 Chr1:65225684 Cpgi333 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263763451
MGI SNP Detail		 Chr1:65225749 Cpgi333 within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223111217
MGI SNP Detail		 Chr1:65225850 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 within coordinates of
Tssr7122 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs239566533
MGI SNP Detail		 Chr1:65225989 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 81 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs252263030
MGI SNP Detail		 Chr1:65226115 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 207 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs219644334
MGI SNP Detail		 Chr1:65226167 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 259 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs247183212
MGI SNP Detail		 Chr1:65226169 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 261 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262670311
MGI SNP Detail		 Chr1:65226208 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 300 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C A C C C A A C A C C C C C C C C C C C C
rs227804849
MGI SNP Detail		 Chr1:65226251 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 343 bp downstream
 SNP A/G G G G G A G G G G A G G G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G A G A G G G A G G
rs241831451
MGI SNP Detail		 Chr1:65226302 Cpgi333 within coordinates of
Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 394 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs585504475
MGI SNP Detail		 Chr1:65226385 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 477 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G
rs260341777
MGI SNP Detail		 Chr1:65226390 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 482 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228923503
MGI SNP Detail		 Chr1:65226413 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 505 bp downstream
 SNP C/T T T T T C T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T C T C C C C T T T C T C T C T C T T
rs246476600
MGI SNP Detail		 Chr1:65226449 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 541 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215881867
MGI SNP Detail		 Chr1:65226475 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 567 bp downstream
 SNP A/G G G G G A G G G G A G G G G G G G G G A G G A G G G G A G G G G G A G A G A A A A G G G A G A G A G A G G
rs229829803
MGI SNP Detail		 Chr1:65226519 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 611 bp downstream
 SNP C/T C C C C T C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C T C T C C C T C C
rs580060554
MGI SNP Detail		 Chr1:65226611 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 703 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256082519
MGI SNP Detail		 Chr1:65226622 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 714 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs212200076
MGI SNP Detail		 Chr1:65226692 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 784 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs237388789
MGI SNP Detail		 Chr1:65226731 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 823 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs108023622
MGI SNP Detail		 Chr1:65226815 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 907 bp downstream
 SNP C C
rs246782783
MGI SNP Detail		 Chr1:65226827 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 919 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T
rs582399799
MGI SNP Detail		 Chr1:65226862 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 954 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217397324
MGI SNP Detail		 Chr1:65227050 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 1142 bp downstream
 SNP C/T T T T T C T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T T C T T T T C T C T T T C T T
rs232916447
MGI SNP Detail		 Chr1:65227077 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 1169 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252321039
MGI SNP Detail		 Chr1:65227160 Pikfyve within coordinates of
Rr29552 within coordinates of
Rr396084 1252 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219657653
MGI SNP Detail		 Chr1:65227203 Pikfyve within coordinates of
Rr396084 1295 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs237278708
MGI SNP Detail		 Chr1:65227293 Pikfyve within coordinates of
Rr396084 1385 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261089491
MGI SNP Detail		 Chr1:65227307 Pikfyve within coordinates of
Rr396084 1399 bp downstream
 SNP A/G G G G G A G G G G A G G G G G G G G G A G G A G G G G A G G G G G A G A G A A A A G G G A G A G A G A G G
rs220114826
MGI SNP Detail		 Chr1:65227353 Pikfyve within coordinates of
Rr396084 1445 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244801143
MGI SNP Detail		 Chr1:65227438 Pikfyve within coordinates of
Rr396084 1530 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T G G T G T T T T T T T T T T T T
rs260432066
MGI SNP Detail		 Chr1:65227556 Pikfyve within coordinates of
Rr396084 1648 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223214305
MGI SNP Detail		 Chr1:65227563 Pikfyve within coordinates of
Rr396084 1655 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240190817
MGI SNP Detail		 Chr1:65227610 Pikfyve within coordinates of
Rr396084 1702 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs259909749
MGI SNP Detail		 Chr1:65227636 Pikfyve within coordinates of
Rr396084 1728 bp downstream
 SNP C/T T T T C T T T T C T T T T T T T T T C T T C T T T T C T T T T C T C T C C C C T T T C T C T C T C T T
rs230123091
MGI SNP Detail		 Chr1:65227658 Pikfyve within coordinates of
Rr396084 1750 bp downstream
 SNP G/T G G G G T G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G T G G G G T G T G G G T G G
rs251417569
MGI SNP Detail		 Chr1:65227800 Pikfyve within coordinates of
Rr396084 1892 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264588207
MGI SNP Detail		 Chr1:65227802 Pikfyve within coordinates of
Rr396084 1894 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228581718
MGI SNP Detail		 Chr1:65227841 Pikfyve within coordinates of
Rr396084 1933 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 101
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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