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Mouse SNP Summary
Symbol
Name
ID 		Rr396412
regulatory region 396412
MGI:7692524

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217525589
MGI SNP Detail		 Chr1:154973780 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 1539 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228703628
MGI SNP Detail		 Chr1:154974093 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 1226 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246146613
MGI SNP Detail		 Chr1:154974469 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 850 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215393992
MGI SNP Detail		 Chr1:154974546 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 773 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs239189799
MGI SNP Detail		 Chr1:154974615 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 704 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C
rs257182416
MGI SNP Detail		 Chr1:154974648 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 671 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G
rs213341566
MGI SNP Detail		 Chr1:154974906 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 413 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235448098
MGI SNP Detail		 Chr1:154975277 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 42 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T A T
rs32625392
MGI SNP Detail		 Chr1:154975293 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 26 bp upstream
 SNP A/C C C A
rs223361340
MGI SNP Detail		 Chr1:154975333 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241843681
MGI SNP Detail		 Chr1:154975361 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253484967
MGI SNP Detail		 Chr1:154975369 Cpgi882 within coordinates of
Gm69473 within coordinates of
Ier5 within coordinates of
Rr28750 within coordinates of
Rr396412 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs224011809
MGI SNP Detail		 Chr1:154975462 Cpgi882 within coordinates of
Gm69473 within coordinates of
Rr28750 within coordinates of
Rr396412 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs246589388
MGI SNP Detail		 Chr1:154975547 Cpgi882 within coordinates of
Gm69473 within coordinates of
Gm69486 within coordinates of
Rr28750 within coordinates of
Rr396412 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262211599
MGI SNP Detail		 Chr1:154975662 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr28750 within coordinates of
Rr396412 42 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31489147
MGI SNP Detail		 Chr1:154975822 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 202 bp downstream
 SNP A/G A A A A A A A A G G A G A A A G
rs236255982
MGI SNP Detail		 Chr1:154975905 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 285 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31919039
MGI SNP Detail		 Chr1:154975925 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 305 bp downstream
 SNP A/G G G G G G G G G A A G A G G A
rs228830690
MGI SNP Detail		 Chr1:154975999 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 379 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33693784
MGI SNP Detail		 Chr1:154976016 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 396 bp downstream
 SNP C/T C C C C C C C T C C C C C
rs33692813
MGI SNP Detail		 Chr1:154976057 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 437 bp downstream
 SNP A/G A A A A A A G G A A G A A G
rs33692812
MGI SNP Detail		 Chr1:154976066 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 446 bp downstream
 SNP A/C A A A A A A A A A A A C A A
rs231107615
MGI SNP Detail		 Chr1:154976077 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 457 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255432225
MGI SNP Detail		 Chr1:154976107 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 487 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T C C C T T T T T T T C C T T T C T T C C
rs212929033
MGI SNP Detail		 Chr1:154976111 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 491 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229907240
MGI SNP Detail		 Chr1:154976119 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 499 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A C A A A A A
rs243511345
MGI SNP Detail		 Chr1:154976151 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 531 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217432025
MGI SNP Detail		 Chr1:154976223 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 603 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T G T T T G G T T T T G T G G G T T T T T T T G G T T T G T G T G G G
rs235509862
MGI SNP Detail		 Chr1:154976245 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 625 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T
rs253523539
MGI SNP Detail		 Chr1:154976478 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 858 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs581431634
MGI SNP Detail		 Chr1:154976556 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 936 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32551917
MGI SNP Detail		 Chr1:154976604 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 984 bp downstream
 SNP C/T T T T C T
rs32519455
MGI SNP Detail		 Chr1:154976704 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1084 bp downstream
 SNP A/T A A A A A A A T T A A A A T
rs32791571
MGI SNP Detail		 Chr1:154976916 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1296 bp downstream
 SNP A/C A A A A A A A A C C A A C A A A C
rs221066211
MGI SNP Detail		 Chr1:154977042 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1422 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33692811
MGI SNP Detail		 Chr1:154977089 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1469 bp downstream
 SNP A/C C C C C C C A A C C C C C A
rs259531837
MGI SNP Detail		 Chr1:154977095 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1475 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33692810
MGI SNP Detail		 Chr1:154977141 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1521 bp downstream
 SNP A/G A A A A A A G G A A A A G
rs33692809
MGI SNP Detail		 Chr1:154977169 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1549 bp downstream
 SNP C/G G G G G G G G C C G C G G C
rs52287367
MGI SNP Detail		 Chr1:154977179 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1559 bp downstream
 SNP C/T C C T
rs231469069
MGI SNP Detail		 Chr1:154977272 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1652 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs52351791
MGI SNP Detail		 Chr1:154977280 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1660 bp downstream
 SNP C/T C C T
rs250883044
MGI SNP Detail		 Chr1:154977293 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1673 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs51199395
MGI SNP Detail		 Chr1:154977435 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1815 bp downstream
 SNP A/G G A
rs45682741
MGI SNP Detail		 Chr1:154977438 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1818 bp downstream
 SNP C/T C T
rs31858116
MGI SNP Detail		 Chr1:154977460 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1840 bp downstream
 SNP A/G A A A G
rs216737475
MGI SNP Detail		 Chr1:154977513 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1893 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33692808
MGI SNP Detail		 Chr1:154977515 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1895 bp downstream
 SNP A/G G G G G G G A A G G G G G A
rs258184433
MGI SNP Detail		 Chr1:154977563 Gm69473 within coordinates of
Gm69486 within coordinates of
Rr396412 1943 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory