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Mouse SNP Summary
Symbol
Name
ID
Rr398404
regulatory region 398404
MGI:7694516

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246683545
MGI SNP Detail
Chr4:116482611 Nasp within coordinates of
Rr398404 1980 bp upstream
Rr99808 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs217254500
MGI SNP Detail
Chr4:116482833 Nasp within coordinates of
Rr398404 1758 bp upstream
Rr99808 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T T T T T T T T C T T T T T T T T T T T T
rs247795507
MGI SNP Detail
Chr4:116482860 Nasp within coordinates of
Rr398404 1731 bp upstream
Rr99808 within coordinates of
SNP A/C A C
rs261520675
MGI SNP Detail
Chr4:116482977 Nasp within coordinates of
Rr398404 1614 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C C C C C C C C T C C C C C C C C C C C C
rs220427728
MGI SNP Detail
Chr4:116483075 Nasp within coordinates of
Rr398404 1516 bp upstream
Rr99808 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238671632
MGI SNP Detail
Chr4:116483079 Nasp within coordinates of
Rr398404 1512 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs256740452
MGI SNP Detail
Chr4:116483102 Nasp within coordinates of
Rr398404 1489 bp upstream
Rr99808 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs221193557
MGI SNP Detail
Chr4:116483146 Nasp within coordinates of
Rr398404 1445 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs238936758
MGI SNP Detail
Chr4:116483152 Nasp within coordinates of
Rr398404 1439 bp upstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G G G G G G G G A G G G G G G G G G G G G
rs259637213
MGI SNP Detail
Chr4:116483159 Nasp within coordinates of
Rr398404 1432 bp upstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G G G G G G G G A G G G G G G G G G G G G
rs222972399
MGI SNP Detail
Chr4:116483164 Nasp within coordinates of
Rr398404 1427 bp upstream
Rr99808 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs247854784
MGI SNP Detail
Chr4:116483299 Nasp within coordinates of
Rr398404 1292 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C T T C C C C C T C C C C C C T C C C C C C C T C C C C
rs264954891
MGI SNP Detail
Chr4:116483467 Nasp within coordinates of
Rr398404 1124 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228188305
MGI SNP Detail
Chr4:116483599 Nasp within coordinates of
Rr398404 992 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27533347
MGI SNP Detail
Chr4:116483655 Nasp within coordinates of
Rr398404 936 bp upstream
Rr99808 within coordinates of
SNP A/G A A A A A A A G A A G A
rs27533346
MGI SNP Detail
Chr4:116483725 Nasp within coordinates of
Rr398404 866 bp upstream
Rr99808 within coordinates of
SNP A/G A A G A A A A A A A A A A G A G A
rs228137754
MGI SNP Detail
Chr4:116483759 Nasp within coordinates of
Rr398404 832 bp upstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G A A G G G G G A G G G G G G A G G G G G G G A G G G G
rs246669436
MGI SNP Detail
Chr4:116483913 Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 678 bp upstream
Rr99808 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs231430822
MGI SNP Detail
Chr4:116483995 Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 596 bp upstream
Rr99808 within coordinates of
SNP A/G A G
rs32538260
MGI SNP Detail
Chr4:116484013 Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 578 bp upstream
Rr99808 within coordinates of
SNP A/G A A G G G G
rs249798381
MGI SNP Detail
Chr4:116484065 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 526 bp upstream
Rr99808 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G
rs212105575
MGI SNP Detail
Chr4:116484073 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 518 bp upstream
Rr99808 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27533345
MGI SNP Detail
Chr4:116484076 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 515 bp upstream
Rr99808 within coordinates of
SNP C/T C C T C C C C C C C C T T C
rs27533344
MGI SNP Detail
Chr4:116484141 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398403 within coordinates of
Rr398404 450 bp upstream
Rr99808 within coordinates of
SNP C/G C C G C C C C C C C C C G C C
rs221132114
MGI SNP Detail
Chr4:116484314 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 277 bp upstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232603886
MGI SNP Detail
Chr4:116484348 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 243 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T T C C C C C C T C T C C C C C
rs27533343
MGI SNP Detail
Chr4:116484402 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 189 bp upstream
Rr99808 within coordinates of
SNP C/T C C T C C C C C C T C C C C C C C
rs221833137
MGI SNP Detail
Chr4:116484426 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 165 bp upstream
Rr99808 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C G G C C C C C G C C C C C C G C C C C C C C G C C C C
rs250473382
MGI SNP Detail
Chr4:116484437 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 154 bp upstream
Rr99808 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs256534262
MGI SNP Detail
Chr4:116484438 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 153 bp upstream
Rr99808 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs220439547
MGI SNP Detail
Chr4:116484511 A430091L06Rik within coordinates of
Cpgi14636 within coordinates of
Nasp within coordinates of
Rr398404 80 bp upstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs6160954
MGI SNP Detail
Chr4:116484931 A430091L06Rik within coordinates of
Nasp within coordinates of
Rr398404 39 bp downstream
Rr99808 within coordinates of
SNP C/T T C
rs257970937
MGI SNP Detail
Chr4:116484945 A430091L06Rik within coordinates of
Nasp within coordinates of
Rr398404 53 bp downstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228130042
MGI SNP Detail
Chr4:116485229 A430091L06Rik within coordinates of
Rr398404 337 bp downstream
Rr398405 within coordinates of
Rr99808 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240627588
MGI SNP Detail
Chr4:116485262 A430091L06Rik within coordinates of
Rr398404 370 bp downstream
Rr398405 within coordinates of
Rr99808 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27533342
MGI SNP Detail
Chr4:116485267 A430091L06Rik within coordinates of
Rr398404 375 bp downstream
Rr398405 within coordinates of
Rr99808 within coordinates of
SNP G/T G G G G G G G G G T G G G G
rs233254475
MGI SNP Detail
Chr4:116485318 A430091L06Rik within coordinates of
Rr398404 426 bp downstream
Rr398405 within coordinates of
Rr99808 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27533341
MGI SNP Detail
Chr4:116485340 A430091L06Rik within coordinates of
Rr398404 448 bp downstream
Rr398405 within coordinates of
Rr99808 within coordinates of
SNP A/G G G A G G G G G G G G A G A G
rs211893083
MGI SNP Detail
Chr4:116485367 A430091L06Rik within coordinates of
Rr398404 475 bp downstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231030414
MGI SNP Detail
Chr4:116485474 A430091L06Rik within coordinates of
Rr398404 582 bp downstream
Rr99808 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C G G C C C C C C C C C C C C G C C C C C C C C C C C C
rs243801292
MGI SNP Detail
Chr4:116485478 A430091L06Rik within coordinates of
Rr398404 586 bp downstream
Rr99808 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242245872
MGI SNP Detail
Chr4:116485504 A430091L06Rik within coordinates of
Rr398404 612 bp downstream
Rr99808 within coordinates of
SNP C/T C T
rs217299007
MGI SNP Detail
Chr4:116485546 A430091L06Rik within coordinates of
Rr398404 654 bp downstream
Rr99808 within coordinates of
SNP A/G G A
rs252965575
MGI SNP Detail
Chr4:116485565 A430091L06Rik within coordinates of
Rr398404 673 bp downstream
Rr99808 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G G G G G G G G A G G G G G G G G G G G G
rs242100762
MGI SNP Detail
Chr4:116485570 A430091L06Rik within coordinates of
Rr398404 678 bp downstream
Rr99808 within coordinates of
SNP C/G G C
rs253022178
MGI SNP Detail
Chr4:116485581 A430091L06Rik within coordinates of
Rr398404 689 bp downstream
Rr99808 within coordinates of
SNP A/G G A
rs260711163
MGI SNP Detail
Chr4:116485612 A430091L06Rik within coordinates of
Rr398404 720 bp downstream
Rr99808 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T G G T T T T T T T T T T T T G T T T T T T T T T T T T
rs216050763
MGI SNP Detail
Chr4:116485803 A430091L06Rik within coordinates of
Rr398404 911 bp downstream
SNP A/C C A
rs247236983
MGI SNP Detail
Chr4:116485804 A430091L06Rik within coordinates of
Rr398404 912 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G G G G G G G G A G G G G G G G G G G G G
rs251547899
MGI SNP Detail
Chr4:116485866 A430091L06Rik within coordinates of
Rr398404 974 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222250406
MGI SNP Detail
Chr4:116485911 Rr398404 1019 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238024108
MGI SNP Detail
Chr4:116485916 Rr398404 1024 bp downstream
SNP A/G A G
rs252232526
MGI SNP Detail
Chr4:116486135 Rr398404 1243 bp downstream
Rr84401 within coordinates of
SNP A/T A T
rs586087528
MGI SNP Detail
Chr4:116486151 Rr398404 1259 bp downstream
Rr84401 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T T T T T T T T C T T T T T T T T T T T T
rs261304293
MGI SNP Detail
Chr4:116486182 Rr398404 1290 bp downstream
Rr84401 within coordinates of
SNP G/T G G G T G G G G G G G G G G G G G G T G G T G G G T T G G G G G T G G T T T G T G G G G T G T T G G G G
rs234178349
MGI SNP Detail
Chr4:116486256 Rr398404 1364 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs213681199
MGI SNP Detail
Chr4:116486288 Rr398404 1396 bp downstream
SNP A/C C A
rs230711416
MGI SNP Detail
Chr4:116486305 Rr398404 1413 bp downstream
SNP A/G G A
rs230772711
MGI SNP Detail
Chr4:116486314 Rr398404 1422 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C C C C C C C C T C C C C C C C C C C C C
rs249728745
MGI SNP Detail
Chr4:116486352 Rr398404 1460 bp downstream
SNP A/G A G
rs580413427
MGI SNP Detail
Chr4:116486382 Rr398404 1490 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs582918121
MGI SNP Detail
Chr4:116486403 Rr398404 1511 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215880546
MGI SNP Detail
Chr4:116486420 Rr398404 1528 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227139387
MGI SNP Detail
Chr4:116486531 Rr398404 1639 bp downstream
SNP A/T A T
rs581546780
MGI SNP Detail
Chr4:116486672 Rr398404 1780 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247430785
MGI SNP Detail
Chr4:116486773 Rr398404 1881 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217440049
MGI SNP Detail
Chr4:116486839 Rr398404 1947 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236906190
MGI SNP Detail
Chr4:116486840 Rr398404 1948 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255276159
MGI SNP Detail
Chr4:116486872 Rr398404 1980 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 69 of 69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory