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Mouse SNP Summary
Symbol
Name
ID 		Rr400038
regulatory region 400038
MGI:7696150

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Showing SNP(s) 1 - 34 of 34

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs48637397
MGI SNP Detail
Alliance Variant		 Chr6:144632982 Rr400038 1919 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T T T C T T C C C T C C T T T T
rs49153158
MGI SNP Detail
Alliance Variant		 Chr6:144632990 Rr400038 1911 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/G G G C
rs48233947
MGI SNP Detail
Alliance Variant		 Chr6:144633003 Rr400038 1898 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G A A G A A G G G A G G A A A A
rs45712690
MGI SNP Detail
Alliance Variant		 Chr6:144633038 Rr400038 1863 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/G G G C G G C C C G C C C G G C G G
rs50869698
MGI SNP Detail
Alliance Variant		 Chr6:144633099 Rr400038 1802 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T T T G T T G G G T G G G T T G T T
rs49017867
MGI SNP Detail
Alliance Variant		 Chr6:144633164 Rr400038 1737 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/T T T A T T A A A T A A A T T A T T
rs50991870
MGI SNP Detail
Alliance Variant		 Chr6:144633193 Rr400038 1708 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/T T T A T T A A A T A A A T T A T T
rs45836963
MGI SNP Detail
Alliance Variant		 Chr6:144633205 Rr400038 1696 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T G G T G G T G T G T T G G G G G G
rs46380806
MGI SNP Detail		 Chr6:144633259 Rr400038 1642 bp upstream
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T C C T T T C T T T C C T C C
rs47951325
MGI SNP Detail
Alliance Variant		 Chr6:144633311 Rr400038 1590 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/G G C C G
rs51070150
MGI SNP Detail
Alliance Variant		 Chr6:144633337 Rr400038 1564 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T T T T C T T C C C T C C C T T C T T
rs47128197
MGI SNP Detail
Alliance Variant		 Chr6:144633728 Rr400038 1173 bp upstream
Rr640977 within coordinates of
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G A A A G A A G G G A G G G A A G A A
rs46140918
MGI SNP Detail
Alliance Variant		 Chr6:144633825 Rr400038 1076 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G G A G G A A A G A A A G G G G G
rs46375856
MGI SNP Detail
Alliance Variant		 Chr6:144634016 Rr400038 885 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/T T T T T T T T T T T A T T T T
rs50957125
MGI SNP Detail
Alliance Variant		 Chr6:144634298 Rr400038 603 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C C C C C T C C C T C C C C
rs47214426
MGI SNP Detail
Alliance Variant		 Chr6:144634351 Rr400038 550 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs46464398
MGI SNP Detail
Alliance Variant		 Chr6:144634433 Rr400038 468 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G G G G G G A G G G G G G
rs50771763
MGI SNP Detail
Alliance Variant		 Chr6:144634477 Rr400038 424 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C T C C T C T C T T C C C C C C
rs30217200
MGI SNP Detail
Alliance Variant		 Chr6:144634782 Rr400038 119 bp upstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T T T T G T T G G G T G G G T T G T T
rs49164753
MGI SNP Detail
Alliance Variant		 Chr6:144635206 Rr400038 5 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/C C C C A C C A A A C A A C C A C C
rs30938053
MGI SNP Detail
Alliance Variant		 Chr6:144635238 Rr400038 37 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C C T C C T C T T C T T T C C T C C
rs30165949
MGI SNP Detail
Alliance Variant		 Chr6:144635478 Rr400038 277 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T G G G T G G T G T T G T T T G G T G G
rs29876321
MGI SNP Detail
Alliance Variant		 Chr6:144635557 Rr400038 356 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T T T T G G T
rs30657551
MGI SNP Detail
Alliance Variant		 Chr6:144635676 Rr400038 475 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G G G A G G A G A A G A A A G G A G G
rs45820804
MGI SNP Detail
Alliance Variant		 Chr6:144635809 Rr400038 608 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G G G G G G G G G G G G G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs51995142
MGI SNP Detail
Alliance Variant		 Chr6:144636580 Rr400038 1379 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C C C C C T C T T C C C C C
rs49900676
MGI SNP Detail
Alliance Variant		 Chr6:144636693 Rr400038 1492 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T T C
rs46523547
MGI SNP Detail
Alliance Variant		 Chr6:144636700 Rr400038 1499 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G A G G A
rs49356696
MGI SNP Detail
Alliance Variant		 Chr6:144636761 Rr400038 1560 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP G/T G T T G
rs48913192
MGI SNP Detail
Alliance Variant		 Chr6:144636783 Rr400038 1582 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G A
rs51396990
MGI SNP Detail
Alliance Variant		 Chr6:144636907 Rr400038 1706 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C T
rs51966295
MGI SNP Detail
Alliance Variant		 Chr6:144636964 Rr400038 1763 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/G G G A G G A A A G A A A G G A G G
rs47340229
MGI SNP Detail
Alliance Variant		 Chr6:144636989 Rr400038 1788 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP A/T T T A T T A A A T A A A T T A T T
rs45950042
MGI SNP Detail
Alliance Variant		 Chr6:144637027 Rr400038 1826 bp downstream
Sox5 Intron
Sox5 Noncoding-Transcript-Variant
Sox5os3 within coordinates of
 SNP C/T C C T C C T T T C T T T C C T C C
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Showing SNP(s) 1 - 34 of 34
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory