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Mouse SNP Summary
Symbol
Name
ID 		Rr401509
regulatory region 401509
MGI:7697621

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51136330
MGI SNP Detail		 Chr9:72437084 4930509E16Rik within coordinates of
Rr401509 1817 bp upstream
Rr682766 within coordinates of
 SNP C/G G C C C C
rs48039144
MGI SNP Detail		 Chr9:72437097 4930509E16Rik within coordinates of
Rr401509 1804 bp upstream
Rr682766 within coordinates of
 SNP A/G A G G G G
rs36782171
MGI SNP Detail		 Chr9:72437140 4930509E16Rik within coordinates of
Rr401509 1761 bp upstream
Rr682766 within coordinates of
 SNP C/T C C C T C
rs254414209
MGI SNP Detail		 Chr9:72437221 4930509E16Rik within coordinates of
Rr401509 1680 bp upstream
Rr682766 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223430474
MGI SNP Detail		 Chr9:72437291 4930509E16Rik within coordinates of
Rr401509 1610 bp upstream
Rr682766 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237138334
MGI SNP Detail		 Chr9:72437428 4930509E16Rik within coordinates of
Rr401509 1473 bp upstream
Rr682766 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs46424439
MGI SNP Detail		 Chr9:72437564 4930509E16Rik within coordinates of
Rr401509 1337 bp upstream
Rr682766 within coordinates of
 SNP A/G G A A A
rs50768798
MGI SNP Detail		 Chr9:72437566 4930509E16Rik within coordinates of
Rr401509 1335 bp upstream
Rr682766 within coordinates of
 SNP C/T C T T T
rs244346621
MGI SNP Detail		 Chr9:72437567 4930509E16Rik within coordinates of
Rr401509 1334 bp upstream
Rr682766 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs218236965
MGI SNP Detail		 Chr9:72437653 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 1248 bp upstream
Rr682766 within coordinates of
 SNP C C C
rs232677081
MGI SNP Detail		 Chr9:72437660 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 1241 bp upstream
Rr682766 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs217620517
MGI SNP Detail		 Chr9:72437904 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 997 bp upstream
Rr682768 within coordinates of
 SNP C/T T T T T T T T T T T T T C T T T T C T T T T T
rs223876101
MGI SNP Detail		 Chr9:72437919 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 982 bp upstream
Rr682768 within coordinates of
 SNP C/T T T T T T T C C T C C T T
rs212563412
MGI SNP Detail		 Chr9:72437924 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 977 bp upstream
Rr682768 within coordinates of
 SNP G/T G G G G G G G G G G G T G G G T G G G G G
rs237593775
MGI SNP Detail		 Chr9:72437925 4930509E16Rik within coordinates of
Rr401508 within coordinates of
Rr401509 976 bp upstream
Rr682768 within coordinates of
 SNP A/G A A A A A A A A A A A G A A A G A A A A A
rs257691972
MGI SNP Detail		 Chr9:72437954 4930509E16Rik within coordinates of
Rr401509 947 bp upstream
Rr682768 within coordinates of
 SNP A/G G G A A G A A G A A A G G G G G G G A A A G A A A A G A A G A A A A A A A A G A A A A A A A A G A G G
rs583011934
MGI SNP Detail		 Chr9:72437975 4930509E16Rik within coordinates of
Rr401509 926 bp upstream
Rr682768 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
rs236959089
MGI SNP Detail		 Chr9:72437981 4930509E16Rik within coordinates of
Rr401509 920 bp upstream
Rr682768 within coordinates of
 SNP A A A
rs238592562
MGI SNP Detail		 Chr9:72438136 4930509E16Rik within coordinates of
Rr401509 765 bp upstream
Rr682768 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs266031788
MGI SNP Detail		 Chr9:72438158 4930509E16Rik within coordinates of
Rr401509 743 bp upstream
Rr682768 within coordinates of
 SNP G G G
rs223333620
MGI SNP Detail		 Chr9:72438204 4930509E16Rik within coordinates of
Rr401509 697 bp upstream
Rr682768 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234203646
MGI SNP Detail		 Chr9:72438341 4930509E16Rik within coordinates of
Rr401509 560 bp upstream
 SNP T T T
rs250370608
MGI SNP Detail		 Chr9:72438357 4930509E16Rik within coordinates of
Rr401509 544 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C C G C C C C C C C C C C C C
rs222688313
MGI SNP Detail		 Chr9:72438358 4930509E16Rik within coordinates of
Rr401509 543 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246954143
MGI SNP Detail		 Chr9:72438363 4930509E16Rik within coordinates of
Rr401509 538 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30236119
MGI SNP Detail		 Chr9:72438374 4930509E16Rik within coordinates of
Rr401509 527 bp upstream
 SNP A/C A A C A A
rs3695704
MGI SNP Detail		 Chr9:72438538 4930509E16Rik within coordinates of
Rr401509 363 bp upstream
 SNP C/G C G
rs586805213
MGI SNP Detail		 Chr9:72438619 4930509E16Rik within coordinates of
Rr401509 282 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233294210
MGI SNP Detail		 Chr9:72438632 4930509E16Rik within coordinates of
Rr401509 269 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247593703
MGI SNP Detail		 Chr9:72438678 4930509E16Rik within coordinates of
Rr401509 223 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260169644
MGI SNP Detail		 Chr9:72438825 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 76 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T C T T T T
rs223679178
MGI SNP Detail		 Chr9:72438887 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 14 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243433884
MGI SNP Detail		 Chr9:72439057 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 within coordinates of
Rr682770 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs213992823
MGI SNP Detail		 Chr9:72439102 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 within coordinates of
Rr682770 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229486632
MGI SNP Detail		 Chr9:72439109 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 within coordinates of
Rr682770 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G C G G G G G G G G G G G
rs255850131
MGI SNP Detail		 Chr9:72439126 4930509E16Rik within coordinates of
Cpgi22017 within coordinates of
Rr401509 within coordinates of
Rr682770 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215258823
MGI SNP Detail		 Chr9:72439266 Cpgi22017 within coordinates of
Rr401509 64 bp downstream
Rr682770 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs240752840
MGI SNP Detail		 Chr9:72439282 Cpgi22017 within coordinates of
Rr401509 80 bp downstream
Rr682770 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247746378
MGI SNP Detail		 Chr9:72439310 Cpgi22017 within coordinates of
Rr401509 108 bp downstream
Rr682770 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A C A A
rs217306075
MGI SNP Detail		 Chr9:72439316 Cpgi22017 within coordinates of
Rr401509 114 bp downstream
Rr682770 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs229802064
MGI SNP Detail		 Chr9:72439519 Cpgi22017 within coordinates of
Rr401509 317 bp downstream
Rr682770 within coordinates of
Tssr86011 within coordinates of
 SNP A/G G G G G G G G G G G G G G G A G G G A G G G G G G G A G G G G G G G G G
rs263586089
MGI SNP Detail		 Chr9:72439631 Cpgi22017 within coordinates of
Rfx7 within coordinates of
Rr401509 429 bp downstream
Rr682770 within coordinates of
 SNP A/G A G
rs29637173
MGI SNP Detail		 Chr9:72440277 Cpgi22017 within coordinates of
Rfx7 within coordinates of
Rr401509 1075 bp downstream
 SNP C/T T C T T T
rs222050767
MGI SNP Detail		 Chr9:72440389 Cpgi22017 within coordinates of
Rfx7 within coordinates of
Rr401509 1187 bp downstream
 SNP C/G C C C G G G G G C G G G G G G G C C C G G G G G G G G G G G C G G G G G G G G G G G G G G G G G C G C C
rs237105114
MGI SNP Detail		 Chr9:72440416 Cpgi22017 within coordinates of
Rfx7 within coordinates of
Rr401509 1214 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs262948653
MGI SNP Detail		 Chr9:72440439 Cpgi22017 within coordinates of
Rfx7 within coordinates of
Rr401509 1237 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580679263
MGI SNP Detail		 Chr9:72440501 Rfx7 within coordinates of
Rr401509 1299 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52271174
MGI SNP Detail		 Chr9:72440511 Rfx7 within coordinates of
Rr401509 1309 bp downstream
 SNP C C C C
rs584649006
MGI SNP Detail		 Chr9:72440621 Rfx7 within coordinates of
Rr401509 1419 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs29737248
MGI SNP Detail		 Chr9:72440799 Rfx7 within coordinates of
Rr401509 1597 bp downstream
 SNP G/T G T G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30083317
MGI SNP Detail		 Chr9:72440830 Rfx7 within coordinates of
Rr401509 1628 bp downstream
 SNP A/T T A T T T
rs218235254
MGI SNP Detail		 Chr9:72440856 Rfx7 within coordinates of
Rr401509 1654 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586934650
MGI SNP Detail		 Chr9:72441146 Rfx7 within coordinates of
Rr401509 1944 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236953739
MGI SNP Detail		 Chr9:72441201 Rfx7 within coordinates of
Rr401509 1999 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory