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Mouse SNP Summary
Symbol
Name
ID 		Rr402329
regulatory region 402329
MGI:7698441

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253195013
MGI SNP Detail
Alliance Variant		 Chr10:127342950 Rr402329 1950 bp upstream
Stac3 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs214303285
MGI SNP Detail
Alliance Variant		 Chr10:127342988 Rr402329 1912 bp upstream
Stac3 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs237137659
MGI SNP Detail
Alliance Variant		 Chr10:127343029 Rr402329 1871 bp upstream
Stac3 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261051373
MGI SNP Detail
Alliance Variant		 Chr10:127343050 Rr402329 1850 bp upstream
Stac3 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218020163
MGI SNP Detail
Alliance Variant		 Chr10:127343057 Rr402329 1843 bp upstream
Stac3 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584181648
MGI SNP Detail
Alliance Variant		 Chr10:127343187 Rr402329 1713 bp upstream
Stac3 Intron
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs49034296
MGI SNP Detail
Alliance Variant		 Chr10:127343256 Rr402329 1644 bp upstream
Stac3 Intron
 SNP C/T C C C C T C C C C C T C
rs254366762
MGI SNP Detail
Alliance Variant		 Chr10:127343323 Rr402329 1577 bp upstream
Stac3 Intron
Stac3 Splice-Site
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs223483521
MGI SNP Detail
Alliance Variant		 Chr10:127343417 Rr402329 1483 bp upstream
Stac3 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49495480
MGI SNP Detail
Alliance Variant		 Chr10:127343529 Rr402329 1371 bp upstream
Stac3 Intron
 SNP A/G A A A A A G A A A A A A A A
rs47365371
MGI SNP Detail
Alliance Variant		 Chr10:127343532 Rr402329 1368 bp upstream
Stac3 Intron
 SNP A/G G A G G G G G A G A G A G G G G
rs221726965
MGI SNP Detail
Alliance Variant		 Chr10:127343556 Rr402329 1344 bp upstream
Stac3 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243825556
MGI SNP Detail
Alliance Variant		 Chr10:127343874 Cpgi2359 within coordinates of
Rr402329 1026 bp upstream
Stac3 Intron
Stac3 Splice-Site
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs264563682
MGI SNP Detail
Alliance Variant		 Chr10:127344126 Cpgi2359 within coordinates of
Rr402329 774 bp upstream
Stac3 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587407263
MGI SNP Detail
Alliance Variant		 Chr10:127344203 Rr402329 697 bp upstream
Stac3 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs241118140
MGI SNP Detail
Alliance Variant		 Chr10:127344241 Rr402328 within coordinates of
Rr402329 659 bp upstream
Stac3 Intron
Stac3 Splice-Site
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A
rs260149973
MGI SNP Detail
Alliance Variant		 Chr10:127344378 Rr402328 within coordinates of
Rr402329 522 bp upstream
Stac3 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227137891
MGI SNP Detail
Alliance Variant		 Chr10:127344412 Rr402328 within coordinates of
Rr402329 488 bp upstream
Stac3 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs258746137
MGI SNP Detail
Alliance Variant		 Chr10:127344429 Rr402328 within coordinates of
Rr402329 471 bp upstream
Stac3 mRNA-UTR
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213827456
MGI SNP Detail
Alliance Variant		 Chr10:127344492 Rr402328 within coordinates of
Rr402329 408 bp upstream
Stac3 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231295149
MGI SNP Detail
Alliance Variant		 Chr10:127344501 Rr402328 within coordinates of
Rr402329 399 bp upstream
Stac3 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs249249179
MGI SNP Detail
Alliance Variant		 Chr10:127344605 Rr402329 295 bp upstream
Stac3 mRNA-UTR
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs213092215
MGI SNP Detail
Alliance Variant		 Chr10:127344623 Rr402329 277 bp upstream
Stac3 mRNA-UTR
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230480684
MGI SNP Detail		 Chr10:127344714 Rr402329 186 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs581588935
MGI SNP Detail		 Chr10:127344736 Rr402329 164 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254196086
MGI SNP Detail		 Chr10:127344915 Rr402329 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49091459
MGI SNP Detail		 Chr10:127344938 Rr402329 within coordinates of
 SNP C/T C C C C C C C C T C C T C
rs48405727
MGI SNP Detail		 Chr10:127344969 Rr402329 within coordinates of
 SNP C/T T T T T T C T T T T T T T T
rs263348323
MGI SNP Detail		 Chr10:127345062 Rr402329 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs222258948
MGI SNP Detail		 Chr10:127345209 Cpgi2360 within coordinates of
Rr402329 9 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246533548
MGI SNP Detail		 Chr10:127345243 Cpgi2360 within coordinates of
Rr402329 43 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247958697
MGI SNP Detail		 Chr10:127345275 Cpgi2360 within coordinates of
Rr402329 75 bp downstream
 SNP C/T T T T T T T T T T C C C T T T T T T C C C C C C C T C C C T T T T C T C C C C T C T C T T T T T C T T C T
rs218424567
MGI SNP Detail		 Chr10:127345280 Cpgi2360 within coordinates of
Rr402329 80 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29335292
MGI SNP Detail		 Chr10:127345610 Rr402329 410 bp downstream
Rr440929 within coordinates of
 SNP C/G G G G G C G C G C G C G C
rs260113790
MGI SNP Detail		 Chr10:127345638 Rr402329 438 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs47220557
MGI SNP Detail		 Chr10:127345762 Rr402329 562 bp downstream
 SNP C/T C C C T C C C C C C C C C
rs29324509
MGI SNP Detail		 Chr10:127345794 Rr402329 594 bp downstream
 SNP C/T T T T C
rs33857716
MGI SNP Detail		 Chr10:127345800 Rr402329 600 bp downstream
 SNP A/C A A A A C C C A C A C C C
rs230957505
MGI SNP Detail		 Chr10:127345809 Rr402329 609 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29354240
MGI SNP Detail		 Chr10:127345815 Rr402329 615 bp downstream
 SNP C/T T T T T C T C T C C
rs212950776
MGI SNP Detail		 Chr10:127345898 Rr402329 698 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582853820
MGI SNP Detail		 Chr10:127346024 Rr402329 824 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs29381509
MGI SNP Detail		 Chr10:127346135 Rr402329 935 bp downstream
 SNP A/G A A A G
rs29317679
MGI SNP Detail		 Chr10:127346177 Rr402329 977 bp downstream
 SNP C/G C C C C G
rs217273214
MGI SNP Detail		 Chr10:127346389 Rr402329 1189 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs29373678
MGI SNP Detail		 Chr10:127346421 Rr402329 1221 bp downstream
 SNP C/T C C C C C C C C C T C T C C T C C
rs45701955
MGI SNP Detail		 Chr10:127346589 Rr402329 1389 bp downstream
 SNP C/G G G G G G G G G G G G G G C G
rs214230973
MGI SNP Detail		 Chr10:127346590 Rr402329 1390 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236973164
MGI SNP Detail		 Chr10:127346770 Rr402329 1570 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49558611
MGI SNP Detail		 Chr10:127346821 Rr402329 1621 bp downstream
 SNP G/T G G G G G G T G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29371895
MGI SNP Detail		 Chr10:127346874 Rr402329 1674 bp downstream
 SNP A/G A A G A G A A A A A G A G A G A A A A
rs234057908
MGI SNP Detail		 Chr10:127346900 Rr402329 1700 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253031467
MGI SNP Detail		 Chr10:127346904 Rr402329 1704 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224447485
MGI SNP Detail		 Chr10:127346909 Rr402329 1709 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249529447
MGI SNP Detail		 Chr10:127346920 Rr402329 1720 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs262562027
MGI SNP Detail		 Chr10:127347122 Rr402329 1922 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223551269
MGI SNP Detail		 Chr10:127347176 Rr402329 1976 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 57 of 57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory