About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr423596
regulatory region 423596
MGI:7885728

<< first < prev1 next > last >>
Showing SNP(s) 1 - 69 of 69

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217354877
MGI SNP Detail
Alliance Variant
Chr1:172327622 Cpgi1053 within coordinates of
Rr423592 within coordinates of
Rr423596 1993 bp proximal
Tagln2 mRNA-UTR
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs234556462
MGI SNP Detail
Alliance Variant
Chr1:172327623 Cpgi1053 within coordinates of
Rr423592 within coordinates of
Rr423596 1992 bp proximal
Tagln2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261640231
MGI SNP Detail
Alliance Variant
Chr1:172327740 Cpgi1053 within coordinates of
Rr423594 within coordinates of
Rr423596 1875 bp proximal
Tagln2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212303100
MGI SNP Detail
Alliance Variant
Chr1:172327829 Cpgi1053 within coordinates of
Rr423596 1786 bp proximal
Tagln2 mRNA-UTR
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs387178394
MGI SNP Detail
Alliance Variant
Chr1:172327887 Cpgi1053 within coordinates of
Rr423596 1728 bp proximal
Tagln2 mRNA-UTR
SNP G/T G G G G G G G G G T G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G T G G
rs50709225
MGI SNP Detail
Alliance Variant
Chr1:172327936 Cpgi1053 within coordinates of
Rr423596 1679 bp proximal
Tagln2 Intron
SNP A/G G G A G G G
rs48203730
MGI SNP Detail
Alliance Variant
Chr1:172328026 Cpgi1053 within coordinates of
Rr423596 1589 bp proximal
Tagln2 Intron
SNP G/T G T T T
rs225701404
MGI SNP Detail
Alliance Variant
Chr1:172328120 Cpgi1053 within coordinates of
Rr423596 1495 bp proximal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31040816
MGI SNP Detail
Alliance Variant
Chr1:172328186 Cpgi1053 within coordinates of
Rr423596 1429 bp proximal
Tagln2 Intron
SNP C/G C G C G
rs254960831
MGI SNP Detail
Alliance Variant
Chr1:172328281 Cpgi1053 within coordinates of
Rr423596 1334 bp proximal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222307791
MGI SNP Detail
Alliance Variant
Chr1:172328463 Cpgi1053 within coordinates of
Rr423595 within coordinates of
Rr423596 1152 bp proximal
Tagln2 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A C A A A A A C A A A A A A A A A A A A A A A A A A A
rs237855934
MGI SNP Detail
Alliance Variant
Chr1:172328534 Cpgi1053 within coordinates of
Rr423595 within coordinates of
Rr423596 1081 bp proximal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264525223
MGI SNP Detail
Alliance Variant
Chr1:172328554 Cpgi1053 within coordinates of
Rr423595 within coordinates of
Rr423596 1061 bp proximal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32156136
MGI SNP Detail
Alliance Variant
Chr1:172328635 Cpgi1053 within coordinates of
Rr423595 within coordinates of
Rr423596 980 bp proximal
Tagln2 Intron
SNP A/G A G G
rs245874208
MGI SNP Detail
Alliance Variant
Chr1:172328681 Cpgi1053 within coordinates of
Rr423595 within coordinates of
Rr423596 934 bp proximal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32800952
MGI SNP Detail
Alliance Variant
Chr1:172328954 Rr423596 661 bp proximal
Tagln2 Intron
SNP A/C A C A
rs237029606
MGI SNP Detail
Alliance Variant
Chr1:172329005 Rr423596 610 bp proximal
Tagln2 Intron
SNP G G G
rs32535396
MGI SNP Detail
Alliance Variant
Chr1:172329018 Rr423596 597 bp proximal
Tagln2 Intron
SNP A/G G A G G G
rs31507138
MGI SNP Detail
Alliance Variant
Chr1:172329052 Rr423596 563 bp proximal
Tagln2 Intron
SNP C/T T C T
rs214819537
MGI SNP Detail
Alliance Variant
Chr1:172329084 Rr423596 531 bp proximal
Tagln2 Intron
SNP T T T
rs212524061
MGI SNP Detail
Alliance Variant
Chr1:172329174 Rr423596 441 bp proximal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237164539
MGI SNP Detail
Alliance Variant
Chr1:172329276 Rr423596 339 bp proximal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255651484
MGI SNP Detail
Alliance Variant
Chr1:172329286 Rr423596 329 bp proximal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216158495
MGI SNP Detail
Alliance Variant
Chr1:172329339 Rr423596 276 bp proximal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234390542
MGI SNP Detail
Alliance Variant
Chr1:172329404 Rr423596 211 bp proximal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108332423
MGI SNP Detail
Alliance Variant
Chr1:172329418 Rr423596 197 bp proximal
Tagln2 Intron
SNP C/G C G
rs108858866
MGI SNP Detail
Alliance Variant
Chr1:172329419 Rr423596 196 bp proximal
Tagln2 Intron
SNP C/G C G
rs235890420
MGI SNP Detail
Alliance Variant
Chr1:172329429 Rr423596 186 bp proximal
Tagln2 Intron
SNP C/T C T
rs50710810
MGI SNP Detail
Alliance Variant
Chr1:172329487 Rr423596 128 bp proximal
Tagln2 Intron
SNP C/T T C C C
rs230262597
MGI SNP Detail
Alliance Variant
Chr1:172329544 Rr423596 71 bp proximal
Tagln2 Intron
Tssr10217 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255178032
MGI SNP Detail
Alliance Variant
Chr1:172329568 Rr423596 47 bp proximal
Tagln2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G G T G G G G G G G G G G G G G G G G G G G
rs222924580
MGI SNP Detail
Alliance Variant
Chr1:172329572 Rr423596 43 bp proximal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242840966
MGI SNP Detail
Alliance Variant
Chr1:172329707 Rr423596 71 bp distal
Tagln2 Intron
SNP A/G G G G A G A G G A A G G A A A A A A A A A G A A A A A A A G G G A A G G G G A A A G G G A A A G A G A G A
rs265686743
MGI SNP Detail
Alliance Variant
Chr1:172329742 Rr423596 106 bp distal
Tagln2 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31997189
MGI SNP Detail
Alliance Variant
Chr1:172329837 Rr423596 201 bp distal
Tagln2 Intron
SNP A/G A A G A A A
rs386880184
MGI SNP Detail
Alliance Variant
Chr1:172329864 Rr423596 228 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T C T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs241542884
MGI SNP Detail
Alliance Variant
Chr1:172329935 Rr423596 299 bp distal
Tagln2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs584220364
MGI SNP Detail
Alliance Variant
Chr1:172329957 Rr423596 321 bp distal
Tagln2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258918552
MGI SNP Detail
Alliance Variant
Chr1:172330031 Rr423596 395 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs387326461
MGI SNP Detail
Alliance Variant
Chr1:172330057 Rr423596 421 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A G A A
rs224327619
MGI SNP Detail
Alliance Variant
Chr1:172330083 Rr423596 447 bp distal
Tagln2 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30746119
MGI SNP Detail
Alliance Variant
Chr1:172330125 Rr423596 489 bp distal
Tagln2 Intron
SNP A/G G G A G G G
rs261548689
MGI SNP Detail
Alliance Variant
Chr1:172330219 Rr423596 583 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231420347
MGI SNP Detail
Alliance Variant
Chr1:172330234 Rr423596 598 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250854110
MGI SNP Detail
Alliance Variant
Chr1:172330285 Rr423596 649 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216201607
MGI SNP Detail
Alliance Variant
Chr1:172330374 Rr423596 738 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234218068
MGI SNP Detail
Alliance Variant
Chr1:172330385 Rr423596 749 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249184812
MGI SNP Detail
Alliance Variant
Chr1:172330429 Rr423596 793 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217054104
MGI SNP Detail
Alliance Variant
Chr1:172330435 Rr423596 799 bp distal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235783309
MGI SNP Detail
Alliance Variant
Chr1:172330499 Rr423596 863 bp distal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260652377
MGI SNP Detail
Alliance Variant
Chr1:172330551 Rr423596 915 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31855538
MGI SNP Detail
Alliance Variant
Chr1:172330641 Rr423596 1005 bp distal
Tagln2 Intron
SNP A/C C A C C
rs251710250
MGI SNP Detail
Alliance Variant
Chr1:172330664 Rr423596 1028 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220644373
MGI SNP Detail
Alliance Variant
Chr1:172330677 Rr423596 1041 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241486474
MGI SNP Detail
Alliance Variant
Chr1:172330762 Rr423596 1126 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258833880
MGI SNP Detail
Alliance Variant
Chr1:172330763 Rr423596 1127 bp distal
Tagln2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252846241
MGI SNP Detail
Alliance Variant
Chr1:172330797 Rr423596 1161 bp distal
Tagln2 Intron
SNP T T T
rs241122950
MGI SNP Detail
Alliance Variant
Chr1:172330824 Rr423596 1188 bp distal
Tagln2 Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264677567
MGI SNP Detail
Alliance Variant
Chr1:172330872 Rr423596 1236 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32689919
MGI SNP Detail
Alliance Variant
Chr1:172330881 Rr423596 1245 bp distal
Tagln2 Intron
SNP C/T C C C T
rs32259193
MGI SNP Detail
Alliance Variant
Chr1:172330882 Rr423596 1246 bp distal
Tagln2 Intron
SNP A/G A G G G A A
rs32164019
MGI SNP Detail
Alliance Variant
Chr1:172330978 Rr423596 1342 bp distal
Tagln2 Intron
SNP A/G G A G A
rs227527598
MGI SNP Detail
Alliance Variant
Chr1:172331198 Rr423596 1562 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249094960
MGI SNP Detail
Alliance Variant
Chr1:172331234 Rr423596 1598 bp distal
Tagln2 Intron
SNP C/T C C C C C C C C C T C C C C C C C C C T C C C C C T C T C C C C C T C C C C C C C C C C C C C C C C T C C
rs216915527
MGI SNP Detail
Alliance Variant
Chr1:172331334 Rr423596 1698 bp distal
Tagln2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229713109
MGI SNP Detail
Alliance Variant
Chr1:172331409 Rr423596 1773 bp distal
Tagln2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249429176
MGI SNP Detail
Alliance Variant
Chr1:172331515 Rr423596 1879 bp distal
Tagln2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31359978
MGI SNP Detail
Alliance Variant
Chr1:172331560 Rr423596 1924 bp distal
Tagln2 Intron
SNP A/G A G G G
rs108810596
MGI SNP Detail
Alliance Variant
Chr1:172331617 Rr423596 1981 bp distal
Tagln2 Intron
SNP C/G C G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 69 of 69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/22/2025
MGI 6.24
The Jackson Laboratory