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Mouse SNP Summary
Symbol
Name
ID 		Rr424425
regulatory region 424425
MGI:7886557

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218944155
MGI SNP Detail
Alliance Variant		 Chr1:180074479 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1961 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T C T T T T T T T T T T T T C T T T T
rs243204906
MGI SNP Detail
Alliance Variant		 Chr1:180074494 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1946 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265071982
MGI SNP Detail
Alliance Variant		 Chr1:180074543 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1897 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs223341520
MGI SNP Detail
Alliance Variant		 Chr1:180074648 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1792 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247696067
MGI SNP Detail
Alliance Variant		 Chr1:180074810 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1630 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47186007
MGI SNP Detail
Alliance Variant		 Chr1:180074825 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1615 bp proximal
 SNP C/G G G G C
rs228184252
MGI SNP Detail
Alliance Variant		 Chr1:180074826 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1614 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241350452
MGI SNP Detail
Alliance Variant		 Chr1:180074837 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1603 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs32026433
MGI SNP Detail
Alliance Variant		 Chr1:180074850 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1590 bp proximal
 SNP A/G G A G A
rs48899525
MGI SNP Detail
Alliance Variant		 Chr1:180074893 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1547 bp proximal
 SNP A/G G G G A
rs45758727
MGI SNP Detail
Alliance Variant		 Chr1:180075020 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1420 bp proximal
 SNP A/G G G G A
rs215689630
MGI SNP Detail
Alliance Variant		 Chr1:180075075 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1365 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231986469
MGI SNP Detail
Alliance Variant		 Chr1:180075078 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1362 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258665893
MGI SNP Detail
Alliance Variant		 Chr1:180075094 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1346 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216933996
MGI SNP Detail
Alliance Variant		 Chr1:180075181 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1259 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236633477
MGI SNP Detail
Alliance Variant		 Chr1:180075286 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1154 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249810934
MGI SNP Detail
Alliance Variant		 Chr1:180075301 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1139 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213026197
MGI SNP Detail
Alliance Variant		 Chr1:180075340 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1100 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47726156
MGI SNP Detail
Alliance Variant		 Chr1:180075352 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1088 bp proximal
 SNP A/G A A A G
rs579609815
MGI SNP Detail
Alliance Variant		 Chr1:180075384 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1056 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257927407
MGI SNP Detail
Alliance Variant		 Chr1:180075406 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1034 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48804821
MGI SNP Detail
Alliance Variant		 Chr1:180075418 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1022 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G
rs46485321
MGI SNP Detail
Alliance Variant		 Chr1:180075421 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1019 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A G A A A A A A A A A A A A G A A A A
rs46135292
MGI SNP Detail
Alliance Variant		 Chr1:180075429 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1011 bp proximal
 SNP A/C/T C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C A C C C C C C C C C C C C T C C C C
rs31960160
MGI SNP Detail
Alliance Variant		 Chr1:180075435 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1005 bp proximal
 SNP C/T T C T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241413809
MGI SNP Detail
Alliance Variant		 Chr1:180075440 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 1000 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T C T T T T T T T T T T T T T T T T T
rs253728956
MGI SNP Detail
Alliance Variant		 Chr1:180075441 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 999 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G
rs108437979
MGI SNP Detail
Alliance Variant		 Chr1:180075484 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 956 bp proximal
 SNP A/G G G A
rs108506532
MGI SNP Detail
Alliance Variant		 Chr1:180075507 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 933 bp proximal
 SNP A/G A A A G
rs262614835
MGI SNP Detail
Alliance Variant		 Chr1:180075508 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 932 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs107724307
MGI SNP Detail
Alliance Variant		 Chr1:180075518 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 922 bp proximal
 SNP C/T C T
rs107664086
MGI SNP Detail
Alliance Variant		 Chr1:180075520 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 920 bp proximal
 SNP C/T T C
rs587466562
MGI SNP Detail
Alliance Variant		 Chr1:180075545 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 895 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs108885398
MGI SNP Detail
Alliance Variant		 Chr1:180075547 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 893 bp proximal
 SNP A/G A A G
rs108411666
MGI SNP Detail
Alliance Variant		 Chr1:180075564 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 876 bp proximal
 SNP C/G G G G C
rs108850072
MGI SNP Detail
Alliance Variant		 Chr1:180075684 Psen2 Intron
Psen2 mRNA-UTR
Psen2 Noncoding-Transcript-Variant
Rr424423 within coordinates of
Rr424425 756 bp proximal
 SNP A/G G G A
rs108748500
MGI SNP Detail
Alliance Variant		 Chr1:180075744 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 696 bp proximal
 SNP A/G G G A
rs243767585
MGI SNP Detail
Alliance Variant		 Chr1:180075749 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 691 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213088912
MGI SNP Detail
Alliance Variant		 Chr1:180075760 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 680 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108800900
MGI SNP Detail
Alliance Variant		 Chr1:180075779 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 661 bp proximal
 SNP A/C C C A
rs107701631
MGI SNP Detail
Alliance Variant		 Chr1:180075780 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 660 bp proximal
 SNP C/T T T C
rs108298903
MGI SNP Detail
Alliance Variant		 Chr1:180075835 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 605 bp proximal
 SNP C/T C C T
rs236366524
MGI SNP Detail
Alliance Variant		 Chr1:180075871 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 569 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262519944
MGI SNP Detail
Alliance Variant		 Chr1:180075901 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424424 within coordinates of
Rr424425 539 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs108461264
MGI SNP Detail
Alliance Variant		 Chr1:180075977 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 463 bp proximal
 SNP C/T C C C T
rs107740772
MGI SNP Detail
Alliance Variant		 Chr1:180076009 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 431 bp proximal
 SNP C/T C C C T
rs108192044
MGI SNP Detail
Alliance Variant		 Chr1:180076024 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 416 bp proximal
 SNP C/T T T T C
rs221922586
MGI SNP Detail
Alliance Variant		 Chr1:180076065 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 375 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs241475220
MGI SNP Detail
Alliance Variant		 Chr1:180076086 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 354 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G A G G G G
rs248060696
MGI SNP Detail
Alliance Variant		 Chr1:180076100 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 340 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31771102
MGI SNP Detail
Alliance Variant		 Chr1:180076114 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 326 bp proximal
 SNP C/T T C T T
rs32539316
MGI SNP Detail
Alliance Variant		 Chr1:180076144 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 296 bp proximal
 SNP A/T T A T T
rs265214528
MGI SNP Detail
Alliance Variant		 Chr1:180076269 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 171 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs223916946
MGI SNP Detail
Alliance Variant		 Chr1:180076350 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 90 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs240965613
MGI SNP Detail
Alliance Variant		 Chr1:180076426 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 14 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C T C C C C
rs260959940
MGI SNP Detail
Alliance Variant		 Chr1:180076495 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229551654
MGI SNP Detail
Alliance Variant		 Chr1:180076500 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243829070
MGI SNP Detail
Alliance Variant		 Chr1:180076566 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262086893
MGI SNP Detail
Alliance Variant		 Chr1:180076630 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 14 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230493189
MGI SNP Detail
Alliance Variant		 Chr1:180076634 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 18 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251697227
MGI SNP Detail
Alliance Variant		 Chr1:180076656 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 40 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A C A A A A A A A A A A A A A A A A A
rs216350742
MGI SNP Detail
Alliance Variant		 Chr1:180076720 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 104 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs233666259
MGI SNP Detail
Alliance Variant		 Chr1:180076750 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 134 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246755229
MGI SNP Detail
Alliance Variant		 Chr1:180076776 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 160 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216688464
MGI SNP Detail
Alliance Variant		 Chr1:180076793 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 177 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235171625
MGI SNP Detail
Alliance Variant		 Chr1:180076807 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 191 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581212208
MGI SNP Detail
Alliance Variant		 Chr1:180076882 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 266 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C A C C C C C C C C C C C C C C C C C
rs583854057
MGI SNP Detail
Alliance Variant		 Chr1:180076892 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 276 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586894629
MGI SNP Detail
Alliance Variant		 Chr1:180076928 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 312 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G
rs581188797
MGI SNP Detail
Alliance Variant		 Chr1:180076930 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 314 bp distal
 SNP C/T T C T T C C C C T C C C C C C C C C C C C C C C T C C T C C C C C C C C T T C C C T T T C T C C C T C C
rs248111656
MGI SNP Detail
Alliance Variant		 Chr1:180076939 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 323 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221332557
MGI SNP Detail
Alliance Variant		 Chr1:180076961 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 345 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A G A A A A A A A A A A A A A A A A A
rs237861680
MGI SNP Detail
Alliance Variant		 Chr1:180077023 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 407 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs52529735
MGI SNP Detail
Alliance Variant		 Chr1:180077026 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 410 bp distal
 SNP A/C/T T C T T T C C C C T C C C C C C C C C C C C C C C T C C T C C C C C C C C C T C C C T T T C T C A C T C C
rs223889409
MGI SNP Detail
Alliance Variant		 Chr1:180077067 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 451 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241018391
MGI SNP Detail
Alliance Variant		 Chr1:180077076 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 460 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260366368
MGI SNP Detail
Alliance Variant		 Chr1:180077113 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 497 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223117602
MGI SNP Detail
Alliance Variant		 Chr1:180077137 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 521 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G
rs32230437
MGI SNP Detail
Alliance Variant		 Chr1:180077151 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 535 bp distal
 SNP C/T C T
rs264949717
MGI SNP Detail
Alliance Variant		 Chr1:180077165 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 549 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T C T T T T T T T T T T T T T T T T T
rs230370141
MGI SNP Detail
Alliance Variant		 Chr1:180077179 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 563 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C C C C C C T C C T C T T T T T C T T T T C T T T T C T T C C T T C
rs256577939
MGI SNP Detail
Alliance Variant		 Chr1:180077206 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 590 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263283853
MGI SNP Detail
Alliance Variant		 Chr1:180077304 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 688 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246810198
MGI SNP Detail
Alliance Variant		 Chr1:180077317 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 701 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G
rs51209862
MGI SNP Detail
Alliance Variant		 Chr1:180077324 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 708 bp distal
Rr424426 within coordinates of
 SNP C/T C T
rs230024401
MGI SNP Detail
Alliance Variant		 Chr1:180077352 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr424425 736 bp distal
Rr424426 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G T G G G G G G G G G G G G G G G G G
rs249133274
MGI SNP Detail
Alliance Variant		 Chr1:180077485 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 869 bp distal
Rr424426 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T T T T T T G T T G T G G G G G T G G G G T G G G G T G G T T G G T
rs213193429
MGI SNP Detail
Alliance Variant		 Chr1:180077510 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 894 bp distal
Rr424426 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A G A A A A A A A A A A A A G A A A A
rs236125301
MGI SNP Detail
Alliance Variant		 Chr1:180077577 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 961 bp distal
Rr424426 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C
rs262376864
MGI SNP Detail
Alliance Variant		 Chr1:180077612 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 996 bp distal
Rr424426 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31417850
MGI SNP Detail
Alliance Variant		 Chr1:180077704 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1088 bp distal
Rr424426 within coordinates of
 SNP C/G G G G C
rs234554934
MGI SNP Detail
Alliance Variant		 Chr1:180077708 Cpgi1103 within coordinates of
Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1092 bp distal
Rr424426 within coordinates of
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C C C C C C C C C T C C C C
rs31870962
MGI SNP Detail
Alliance Variant		 Chr1:180077736 Cpgi1103 within coordinates of
Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1120 bp distal
Rr424426 within coordinates of
 SNP G/T G G G T
rs223177957
MGI SNP Detail
Alliance Variant		 Chr1:180077812 Cpgi1103 within coordinates of
Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1196 bp distal
Rr424426 within coordinates of
 SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs30670767
MGI SNP Detail
Alliance Variant		 Chr1:180077867 Cpgi1103 within coordinates of
Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1251 bp distal
Rr424426 within coordinates of
 SNP A/G A G A G
rs256696518
MGI SNP Detail
Alliance Variant		 Chr1:180077884 Cpgi1103 within coordinates of
Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1268 bp distal
Rr424426 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222606607
MGI SNP Detail
Alliance Variant		 Chr1:180077916 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1300 bp distal
Rr424426 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244513006
MGI SNP Detail
Alliance Variant		 Chr1:180077939 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1323 bp distal
Rr424426 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265575900
MGI SNP Detail
Alliance Variant		 Chr1:180077971 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1355 bp distal
Rr424426 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs227780086
MGI SNP Detail
Alliance Variant		 Chr1:180078042 Psen2 Intron
Psen2 Noncoding-Transcript-Variant
Rr372537 within coordinates of
Rr424425 1426 bp distal
Rr424426 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T C C C T T C T T T T C T T T T T T T C C T T T T T T T T T T T T T T T T
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Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory